Roche LightCycler 480 User manual

LightCycler

®

480 Instrument

Operator's Manual

Software Version 1.5

August 2019

For in vitro diagnostic use.

For life science research only.

Not for use in diagnostic procedures.

3

Prologue

Table of Contents

Prologue 9

I Document Information ............................................................................................................9

1 Revision History .....................................................................................................................................................9

2 Edition Notice .........................................................................................................................................................9

3 Training .....................................................................................................................................................................9

4 Images .......................................................................................................................................................................9

5 Warranty ...................................................................................................................................................................9

6 Copyright ...............................................................................................................................................................10

7 License Information ..........................................................................................................................................10

8 Open-Source and Commercial Software ..................................................................................................10

9 Trademarks ........................................................................................................................................................... 10

10 Feedback ...............................................................................................................................................................10

II Approvals ................................................................................................................................. 11

III Contact Adresses .................................................................................................................. 12

IV Contents of this Operator´s Manual .................................................................................. 12

V Intended Use ........................................................................................................................... 12

VI Conventions Used in this Operator’s Manual .................................................................. 13

VII What is New in Publication Version 5.0 ............................................................................ 15

VIII Warnings and Precautions ................................................................................................... 15

IX Disposal of the Instrument .................................................................................................. 19

A Overview 23

1 Introduction .......................................................................................................................................................23

2 Features ...............................................................................................................................................................24

2.1 Hardware...............................................................................................................................................................24

2.2 Software ................................................................................................................................................................24

3 Speciﬁcations of the LightCycler

®

480 Instrument ....................................................................26

3.1 General ..................................................................................................................................................................26

3.2 Environmental Parameters .............................................................................................................................26

3.3 Interfaces .............................................................................................................................................................. 27

3.4 Sample Capacity ................................................................................................................................................27

3.5 Shipping ................................................................................................................................................................27

3.6 Control Unit ..........................................................................................................................................................27

4 Speciﬁcations of the Detection Unit ................................................................................................... 28

4.1 Excitation ...............................................................................................................................................................28

4.2 Detector .................................................................................................................................................................28

4.3 Optical Filter .........................................................................................................................................................29

4.3.1 Optical Filter Set of the LightCycler

®

480 Instrument I ........................................................................29

4.3.2 Optical Filter Set of the LightCycler

®

480 Instrument II ......................................................................29

5 Speciﬁcations of the Thermal Block Cyclers ................................................................................. 30

6 Speciﬁcations of the Multiwell Plate Barcode Reader .............................................................31

7 Speciﬁcations of a Handheld Barcode Reader ............................................................................. 32

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LightCycler® 480 Instrument — Software Version 1.5

Table of Contents

B System Description 35

1 System Package ............................................................................................................................................. 35

2 Installation .........................................................................................................................................................36

2.1 Installation Requirements ............................................................................................................................... 36

2.2 Space and Power Requirements .................................................................................................................. 37

2.3 Environmental Requirements ........................................................................................................................ 39

2.4 Installation of the LightCycler

®

480 Instrument .................................................................................... 40

3 System Description .......................................................................................................................................44

3.1 Description of the LightCycler

®

480 Instrument .................................................................................... 44

3.2 Description of the Block Cycler Unit ..........................................................................................................48

3.3 Description of the Detection Unit ................................................................................................................51

3.4 Description of the Detection Channels ..................................................................................................... 53

3.4.1 LightCycler

®

480 Instrument I Filter Set .................................................................................................... 53

3.4.2 LightCycler

®

480 Instrument II Filter Set ...................................................................................................54

3.5 LightCycler

®

480 Disposables .......................................................................................................................55

3.6 LightCycler

®

480 Reagents ............................................................................................................................58

3.7 Additional Equipment Required ................................................................................................................... 59

3.8 Detection Formats for the LightCycler

®

480 Instrument .....................................................................60

3.8.1 Overview ................................................................................................................................................................60

3.8.2 Monitoring PCR with the SYBR Green I Dye ...........................................................................................62

3.8.3 Monitoring PCR with the LightCycler

®

480 ResoLight Dye ...............................................................63

3.8.4 Monitoring PCR with Hydrolysis Probes ...................................................................................................64

3.8.5 Monitoring PCR with HybProbe Probes .................................................................................................... 66

3.8.6 Genotyping with SimpleProbe Probes .......................................................................................................68

C Operation 71

1 Introduction .......................................................................................................................................................71

2 System Start-Up ............................................................................................................................................. 72

3 Preparing and Starting a LightCycler

®

480 Instrument Run .................................................73

4 Exchanging the LightCycler

®

480 Thermal Block Cycler.........................................................76

D LightCycler

®

480 Software 81

Basic Software Functionalities 86

1 Overview of LightCycler

®

480 Software ............................................................................................86

1.1 General LightCycler

®

480 Software User Interface Conventions ..................................................... 87

1.2 Starting the LightCycler

®

480 Software .....................................................................................................88

1.3 Understanding the LightCycler

®

480 Software Main Window .........................................................90

1.4 Selection and Navigation Features.............................................................................................................. 96

1.4.1 The Navigator ...................................................................................................................................................... 96

1.4.2 The Query Tab ...................................................................................................................................................100

1.4.3 Sample Selector ...............................................................................................................................................104

1.4.4 Sample Table .....................................................................................................................................................107

1.5 Exporting and Importing ...............................................................................................................................108

1.5.1 Exporting Individual LightCycler

®

480 Software Objects and Experiment Raw Data ............111

1.5.2 Exporting Multiple Files Simultaneously .................................................................................................112

1.5.3 Importing Individual Files .............................................................................................................................. 115

1.5.4 Importing Multiple Files Simultaneously ................................................................................................. 116

5

Prologue

Table of Contents

2 Programming and Running an Experiment ...................................................................................119

2.1 Programming an Experiment ....................................................................................................................... 119

2.1.1 Setting Detection Formats ............................................................................................................................122

2.1.2 Deﬁning Programs and Temperature Targets .......................................................................................124

2.1.3 Customizing the Online Data Display ......................................................................................................127

2.1.4 Adding Run Notes ...........................................................................................................................................128

2.2 Running an Experiment .................................................................................................................................128

2.3 Entering Sample Information .......................................................................................................................131

2.3.1 Sample Editor Window...................................................................................................................................131

2.3.2 Sample Editor Action Bar ..............................................................................................................................133

2.3.3 Conﬁguring Sample Editor Properties .....................................................................................................134

2.3.4 Entering Sample Information .......................................................................................................................135

3 Overview of Experimental Analysis ....................................................................................................143

3.1 Overview of Analysis Steps ..........................................................................................................................144

3.2 Using the Analysis Window .........................................................................................................................146

3.2.1 Selecting Filter Combination and Color Compensation ....................................................................147

3.2.2 Working with Samples in the Analysis ..................................................................................................... 148

3.2.3 Working with Charts in the Analysis Window ....................................................................................... 149

3.2.4 Adding Analysis Notes...................................................................................................................................150

3.2.5 Removing or Renaming an Analysis .........................................................................................................150

3.3 Exporting Analysis Results ...........................................................................................................................151

Software Applications 156

4 Quantiﬁcation ................................................................................................................................................. 156

4.1 Overview .............................................................................................................................................................. 156

4.2 Absolute Quantiﬁcation Analysis ...............................................................................................................157

4.2.1 Understanding Sample Crossing Points..................................................................................................158

4.2.2 Understanding the Role of Standard Curves ........................................................................................158

4.2.3 Providing the Standard Curve .....................................................................................................................160

4.2.4 Performing Absolute Quantiﬁcation Analyses Using the Second Derivative

Maximum Method ...........................................................................................................................................163

4.2.5 Performing Absolute Quantiﬁcation Analysis Using the Fit Points Method ..............................166

4.2.6 Viewing Results ................................................................................................................................................172

4.3 Relative Quantiﬁcation Analysis .................................................................................................................175

4.3.1 Overview .............................................................................................................................................................. 175

4.3.2 Mono-Color or Dual-Color Experiment ...................................................................................................178

4.3.3 Principle of Relative Quantiﬁcation Analysis .........................................................................................179

4.3.4 Performing a Basic Relative Quantiﬁcation Experiment .................................................................... 181

4.3.5 Performing an Advanced Relative Quantiﬁcation Experiment ........................................................183

4.3.6 Performing a Relative Quantiﬁcation Analysis ...................................................................................... 189

4.3.7 Viewing the Results ........................................................................................................................................194

4.3.8 Pairing Samples and Creating Result Sets .............................................................................................195

4.3.9 External Standard Curves .............................................................................................................................198

4.3.10 Supplementary Information .........................................................................................................................199

5 Tm Calling Analysis.....................................................................................................................................202

5.1 Using Melting Curve Proﬁles to Identify DNA Products and Genotypes ...................................202

5.1.1 Deﬁning a Melt Program ..............................................................................................................................202

5.1.2 Content of a Melting Temperature Analysis ..........................................................................................203

5.2 Performing Tm Calling Analysis ................................................................................................................. 204

6 Genotyping ....................................................................................................................................................... 212

6.1 Overview .............................................................................................................................................................. 212

6.2 Endpoint Genotyping Analysis .................................................................................................................... 213

6.2.1 Overview .............................................................................................................................................................. 213

6.2.2 Principle of Endpoint Genotyping .............................................................................................................. 215

6.2.3 Performing an Endpoint Genotyping Experiment ................................................................................215

6.2.4 Performing an Endpoint Genotyping Analysis ......................................................................................221

6.2.5 Supplementary Functions ............................................................................................................................. 227

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LightCycler® 480 Instrument — Software Version 1.5

Table of Contents

6.3 Melting Curve Genotyping Analysis .........................................................................................................228

6.3.1 Overview .............................................................................................................................................................. 228

6.3.2 Principle of Melting Curve Genotyping Analysis .................................................................................230

6.3.3 Performing a Melting Curve Genotyping Experiment ........................................................................231

6.3.4 Supplementary Functions ............................................................................................................................. 241

7 Gene Scanning .............................................................................................................................................243

7.1 Gene Scanning with the LightCycler

®

480 System .............................................................................243

7.1.1 High Resolution Melting ...............................................................................................................................244

7.1.2 Components of the LightCycler

®

480 System Gene Scanning Assay ..........................................246

7.1.3 Advantages of the High Resolution Melting Technique....................................................................250

7.2 Preparing a LightCycler

®

480 System Gene Scanning Experiment ..............................................251

7.2.1 Designing the Gene Scanning Assay .......................................................................................................251

7.2.2 Sample Material ...............................................................................................................................................252

7.2.3 PCR Primers .......................................................................................................................................................253

7.2.4 PCR Reagents ...................................................................................................................................................253

7.2.5 PCR Parameters ................................................................................................................................................254

7.2.6 Rapid Detection of Ampliﬁcation Artifacts ............................................................................................256

7.3 Performing Gene Scanning Analysis ........................................................................................................256

7.4 Supplementary Functions ............................................................................................................................. 267

7.4.1 Gene Scanning Template ..............................................................................................................................267

7.4.2 Result Control ..................................................................................................................................................268

Advanced Software Functionalities 270

8 Color Compensation Analysis ...............................................................................................................270

8.1 Performing a Color Compensation Experiment ....................................................................................271

8.2 To Apply Color Compensation.....................................................................................................................278

9 Working with Templates and Macros ............................................................................................... 279

9.1 Creating and Using Templates ....................................................................................................................279

9.2 Creating and Using Macros .........................................................................................................................284

10 Working with Subsets ................................................................................................................................288

11 Working with Charts ................................................................................................................................... 291

11.1 Printing, Exporting, and Copying Charts .................................................................................................291

11.2 Zooming and Panning to View Chart Details ........................................................................................ 295

12 Working with Tables ...................................................................................................................................297

13 Generating Reports ..................................................................................................................................... 299

14 Working with Preferences.......................................................................................................................303

14.1 Using Chart Preferences ............................................................................................................................... 303

14.1.1 Specifying Chart Heading and Label Styles ..........................................................................................305

14.1.2 Specifying the Content of Fluorescence Charts ..................................................................................305

14.1.3 Specifying the Appearance of Standard Curve Charts .....................................................................307

14.1.4 Specifying the Content and Appearance of the Temperature Chart ............................................ 308

14.1.5 Overriding Default Chart Preferences ......................................................................................................308

14.1.6 Creating a Separate Chart Preferences Item and Making it the Default ....................................311

14.2 Using Sample Preferences ...........................................................................................................................312

14.3 Specifying User Preferences .......................................................................................................................314

15 Administrative Tools ...................................................................................................................................315

15.1 Managing User Access .................................................................................................................................316

15.1.1 Understanding User Accounts ...................................................................................................................316

15.1.2 Understanding Groups ..................................................................................................................................316

15.1.3 Understanding Roles ......................................................................................................................................317

15.1.4 Privileges of the Standard User Role ........................................................................................................ 317

15.1.5 Privileges of the Expert User Role .............................................................................................................318

7

Prologue

Table of Contents

15.1.6 Privileges of the Local Administrator Role .............................................................................................319

15.1.7 User Access to Objects .................................................................................................................................320

15.1.8 Managing Users, Groups, and Roles ........................................................................................................ 326

15.1.9 Working with Roles .........................................................................................................................................329

15.2 Report Settings .................................................................................................................................................331

15.3 Error Log .............................................................................................................................................................332

15.4 Database Information ..................................................................................................................................... 333

15.4.1 Traceable and Research Databases .........................................................................................................333

15.4.2 Guidelines for LightCycler

®

480 Database Backup, Cleanup & Compacting ............................334

15.4.3 Database CompactIB Tool ............................................................................................................................338

15.4.4 How to Handle Databases from Software Version 1.3 or Earlier ....................................................340

15.4.5 How to Handle Objects from Software Version 1.3 or Earlier .........................................................340

15.5 Instruments ........................................................................................................................................................341

15.6 Detection Formats ...........................................................................................................................................345

15.7 Setting the Plate Type ..................................................................................................................................... 348

16 Diagnostic Tools ...........................................................................................................................................349

16.1 Instrument Problem Report ..........................................................................................................................349

16.2 Error Log .............................................................................................................................................................350

16.3 Self Test ...............................................................................................................................................................350

17 Installation and Maintenance of LightCycler

®

480 Software..............................................351

17.1 Installing LightCycler

®

480 Software ........................................................................................................352

17.2 Starting the LightCycler

®

480 Software and Connecting an Instrument ....................................358

17.3 Saving an Existing Database and Installing Additional Databases ...............................................361

17.4 Logging on to Different Databases ........................................................................................................... 366

17.5 Replacing an Existing Database File with a Database File of the Same Name ........................ 368

17.6 Setting up a Client/Server Network ..........................................................................................................369

17.7 Removing LightCycler

®

480 Software ......................................................................................................371

E Maintenance 375

1 General Maintenance ................................................................................................................................375

2 Cleaning Instructions .................................................................................................................................375

2.1 General Cleaning .............................................................................................................................................375

2.2 Preventive Maintenance ................................................................................................................................ 375

3 Exchanging the Xenon Lamp ................................................................................................................. 376

4 Exchanging the Ventilation Dust Filters ..........................................................................................380

5 Exchanging Fuses ........................................................................................................................................382

F Appendix 391

1 Troubleshooting ............................................................................................................................................391

1.1 Messages in the Message Area of the LightCycler

®

480 Software ..............................................392

1.2 Instrument Control Software Messages ..................................................................................................393

1.3 Hardware Errors ...............................................................................................................................................395

1.4 Roche Remote Service ...................................................................................................................................397

2 Ordering Information .................................................................................................................................398

3 Index ....................................................................................................................................................................399

8

LightCycler® 480 Instrument — Software Version 1.5

9

Prologue

Document Information

Prologue

I Document Information

1 Revision History

Operator’s Manual

version

Software

version

Revision date Change description

1.0 1.0 September 2005 First version

2.0 1.2 June 2006 New software version

3.0 1.5 February 2008 New software version

4.0 1.5 February 2018 Approvals updated

Addendums 1-4 integrated

Safety information updated

5.0 1.5 August 2019 Windows10 Update,

Integration of Gene

Scanning

2 Edition Notice

This LightCycler® 480 Instrument Operator’s Manual, Software Version 1.5 is intended

for users of the LightCycler® 480 System, running software version 1.5.1, together with the

Instructions for Use for speciﬁc LightCycler® 480 Kits.

Every effort has been made to ensure that all the information contained in this publication

is correct at the time of publishing. However, the manufacturer of this product may need

to update the publication information as output of product surveillance activities, leading

to a new version of this publication.

3 Training

Do not carry out operation tasks or maintenance actions unless you have received training

from Roche Diagnostics. Leave tasks that are not described in the user documentation to

trained Roche Service representatives.

4 Images

The screenshots and hardware images in this publication have been added exclusively for

illustration purposes. Conﬁgurable and variable data in screenshots, such as tests, results,

or path names visible therein must not be used for laboratory purposes.

5 Warranty

Any customer modiﬁcation to the system renders the warranty or service agreement null

and void. For conditions of warranty, contact your local sales representative or refer to

your warranty contract partner. Always perform software updates according to the pro-

vided Roche recommendations.

10

LightCycler® 480 Instrument — Software Version 1.5

Document Information

6 Copyright

7 License Information

The LightCycler® 480 System software is protected by contract law, copyright law,

and international treaties.

The LightCycler® 480 System contains a user license between F. Hoffmann-La Roche Ltd.

and a license holder, and only authorized users may access the software and use it. Unau-

thorized use and distribution may result in civil and criminal penalties.

8 Open-Source and Commercial Software

The LightCycler® 480 System may include components or modules of commercial

or open-source software. For further information on the intellectual property and

other warnings, as well as licenses pertaining to the software programs included in the

LightCycler® 480 System, refer to the information in the folder “License\” in the elec-

tronically distributed installation package for the product or information provid-

ed in the folder “C:/Program Files (x86)/Roche/LightCycler480/License/” on the

LightCycler® 480 Control Unit. This open-source and commercial software and the

LightCycler® 480 System as a whole can constitute a device regulated in accordance with

applicable law. For more detailed information, refer to the user documentation and

labeling.

Note that the respective authorization is no longer valid according to the corresponding

legislation should any unauthorized changes be made to the LightCycler® 480 System.

9 Trademarks

The following trademarks are acknowledged:

LIGHTCYCLER, HYBPROBE, FASTSTART, and RESOLIGHT are trademarks of Roche.

All other trademarks are the property of their respective owners.

10 Feedback

Every effort has been made to ensure that this publication fulﬁlls the intended use.

All feedback on any aspect of this publication is welcome and is considered during updates.

Contact your Roche representative, should you have any such feedback.

11

Prologue

Approvals

II Approvals

The LightCycler® 480 System meets the requirements laid down in:

Directive 2014/30/EU of the European Parliament and Council of 26 February 2014

relating to electromagnetic compatibility (EMC).

Directive 2014/35/EU of the European Parliament and Council of 26 February 2014

relating to electrical equipment designed for use within certain voltage limits.

Directive 2011/65/EU of the European Parliament and of the Council of 8 June 2011

on the restriction of the use of certain hazardous substances in electrical and electronic

equipment.

Compliance with the applicable directive(s) is provided by means of the Declaration of

Conformity.

The following marks demonstrate compliance:

Complies with the provisions of the applicable EU directives.

Issued by Underwriters Laboratories, Inc. (UL) for Canada and the US.

Equipment de

Laboratoire/

Laboratory

Equipment

“Laboratory Equipment” is the product identiﬁer as shown on the type plate.

21 CFR Part 11 Compliance

LightCycler® 480 Software, using traceable database type, is designed to provide compat-

ibility

#)

with FDA’s 21 CFR Part 11 requirements.

The software is compatible with the regulations for electronic records (Subpart B).

Since LightCycler® 480 Software does not feature electronic signatures, the regulations for

electronic signatures (Subpart C) are not applicable.

#)

Full part 11 compliance of the LightCycler® 480 Software is to be established at the

user’s site and depends on appropriate conﬁguration and setup, and the implementa-

tion of suitable organizational measures.

12

LightCycler® 480 Instrument — Software Version 1.5

Contact Adresses

III Contact Adresses

Manufacturer Roche Diagnostics International Ltd.

Forrenstrasse 2

6343 Rotkreuz

Switzerland

Distribution Roche Diagnostics GmbH

Sandhofer Strasse 116

68305 Mannheim

Germany

Distribution in USA Roche Diagnostics

9115 Hague Road

Indianapolis, Indiana

USA

Made in Switzerland

IV Contents of this Operator´s Manual

This Operator’s Manual describes the operation of the LightCycler® 480 System. It con-

tains the following chapters:

Chapter A Overview presents a short introduction to the operating mode of the

LightCycler® 480 Instrument and describes the system’s speciﬁcations.

Chapter B System Description contains the installation instructions of the

LightCycler® 480 System and a description of the system’s components and disposables.

This chapter also gives a short overview of the detection formats for the LightCycler® 480

Instrument.

Chapter C Operation describes the operating procedures for the LightCycler® 480

Instrument.

Chapter D LightCycler® 480 Software contains instructions for programming

LightCycler® 480 Instrument runs and performing data analysis.

Chapter E Maintenance describes the maintenance and care procedures required

for the LightCycler® 480 Instrument.

Chapter F Appendix contains troubleshooting and error code information for the

LightCycler® 480 System, oredering information, and the index.

V Intended Use

The LightCycler® 480 Instrument is intended for performing rapid, accurate polymerase

chain reaction (PCR) in combination with real-time, online detection, enabling Absolute

or Relative Quantiﬁcation of a target nucleic acid, as well as post-PCR analysis of the

ampliﬁed nucleic acid by Melting Curve analysis.

The LightCycler® 480 Instrument is intended for life science research only and must be

used exclusively by laboratory professionals trained in laboratory techniques and having

studied the Instructions for Use of this instrument. The LightCycler® 480 Instrument is

not for use in diagnostic procedures.

13

Prologue

Conventions Used in this Operator’s Manual

VI Conventions Used in this Operator’s

Manual

Text Conventions

To present information that is consistent and easy to read, the following text conventions

are used in this Operator’s Manual:

Numbered

listing

Steps in a procedure that must be performed in the order listed.

Italic type,

blue

Points to a different chapter in this Operator´s Manual, which

should be consulted.

Italic type

Describes how to proceed when operating the LightCycler

®

480

Software.

Symbols Used in the Publication

In this Operator’s Manual, symbols are used as visual signals:

Symbol Meaning Explanation

WARNING This symbol is used to indicate that noncompliance

with instructions or procedures could lead to physi-

cal injury or even death or could cause damage to

the instrument.

HOT SURFACE This symbol is used to label potentially hot

instrument surfaces.

BIO HAZARD This symbol is used to indicate that certain

precautions must be taken when working with

potentially infectious material.

WARNING:

CRUSHING OF HANDS

To warn of a closing motion of mechanical parts of

equipment.

IMPORTANT NOTE Information critical to the success of the procedure

or use of the product.

INFORMATION NOTE Additional information about the current topic or

procedure.

► ► ►

Procedure continued on next page.

■

End of procedure.

14

LightCycler® 480 Instrument — Software Version 1.5

Conventions Used in this Operator’s Manual

Symbols Used on Product

Symbol Meaning Explanation

MANUFACTURER OF

DEVICE

On the instrument type plate.

CE MARK The CE mark on the instrument type plate express-

es conformity with requirements of the directives

relevant for this instrument.

cUL MARK On the instrument type plate.

Global Trade Item

Number

On the instrument type plate.

CONSULT THE

OPERATOR´S MANUAL

On the instrument type plate.

HOT SURFACE 1. On the margin of the multiwell plate loader.

2. On the surface of the block cycler cover.

3. On the surface of the block cycler unit.

4. On the Xenon lamp unit.

BIO HAZARD On the margin of the multiwell plate loader.

WARNING:

CRUSHING OF HANDS

On the instrument housing.

WEEE Electrical and electronic equipment marked with

this symbol are covered by the European directive

WEEE.

The symbol denotes that the equipment must not

be disposed off in the municipal waste system.

Abbreviations

The following abbreviations are used:

Abbreviation Deﬁnition

ANSI American National Standards Institute

EN European Standard

IEC International Electrical Commission

ISO International Organization for Standardization

LIS Laboratory Information System

n/a not applicable

PCR Polymerase Chain Reaction

QC Quality Control

SD Standard Deviation

SN Serial Number

UL Underwriters Laboratories Inc.

WEEE Waste Electrical and Electronic Equipment

15

Prologue

What is New in Publication Version 5.0

VII What is New in Publication Version 5.0

Additional information about Gene Scanning analysis module, updates related to

Windows 10 operating system and safety information.

VIII Warnings and Precautions

The LightCycler® 480 Instrument must only be used by trained and skilled personnel.

It is essential that the following safety information required for installation and operation

of the LightCycler® 480 Instrument is carefully read and observed. Please assure that this

safety information is accessible for every employee working with the LightCycler® 480

Instrument.

To avoid serious or fatal injury, ensure that you are familiar with the system and

safety information provided in the section “Warnings and Precautions” of the

LightCycler® 480 Instrument Operator’s Manual, Software Version 1.5, before you use

the system.

► Pay particular attention to all safety precautions.

► Always follow the instructions in this publication.

Do not carry out operation tasks or maintenance actions unless you have received training

from Roche Diagnostics. Leave tasks that are not described in the user documentation to

trained Roche Service representatives.

Cybersecurity and data privacy for Roche systems installed at customer sites are a shared

responsibility between Roche and each customer. Roche is providing products with ad-

equate protection. In order to ensure that customers operate Roche Products in a privacy

compliant way, we kindly ask you to ensure the following topics:

Access Control

► Physical access to the Product and all attached IT infrastructure (including the analyzer,

computer systems, cables, network equipment, etc.) must be restricted at all times.

Use of operator management built-in functionality in the LightCycler® 480 Software:

► Do not share same operator’s credentials for all lab staff.

► Use a personal user account for each lab staff with appropriate operator level.

► Lock any unused user account (e.g., when staff left).

Network Security

► Customers are responsible for the security of their local area network, especially in

protecting it against malicious software and attacks. This protection might include

measures, such as a ﬁrewall, to separate the device from uncontrolled networks. Ensure

that the connected network is free of malicious code.

► The laboratory network and any laboratory infrastructure must be secured against

unauthorized access, malicious software, and cyber attacks.

► All devices and services used in the customer lab infrastructure must be safe and

secured against malicious software and unauthorized access.

► A secure network environment which is resilient to trafﬁc redirection and eavesdrop-

ping must be installed.

16

LightCycler® 480 Instrument — Software Version 1.5

Warnings and Precautions

Data Transfer and Data Entry on Analyzers

► Writing patient sensitive information in comment ﬁelds can violate patient health

information protection laws. Do not write any patient sensitive information into com-

ment ﬁelds, if these laws are applicable for your country.

Secure Data Storage

► Any data backup and data archive that has been exported from the analyzer must be

physically securely stored and protected from any unauthorized access.

► Data access to any data backup or data archive is permitted to authorized persons only.

► Ensure that data backup and data archives are not taken from the safe and secure stor-

age location (e.g., do not take this data outside the laboratory environment).

Cybersecurity and Privacy Awareness

► Perform regular security and privacy awareness trainings for staff handling personal

data in a compliant way and according the privacy principles that are mandatory by

customer regulations.

► Check your analyzer for suspicious activity and report any suspected compromise im-

mediately to your local Roche representative.

► Update to latest software versions provided by Roche as soon as possible.

Handling Requirements

The LightCycler® 480 Instrument is an electromechanical instrument. There is a

potential danger of electric shock or physical injury for the user if the instrument is not

used according to the instructions given in this manual.

► Follow all safety instructions printed on or attached to the analytical instrument.

► Observe all general safety precautions which apply to electrical instruments.

► Do not access any electrical parts while the LightCycler® 480 Instrument is connected

to the mains.

► Never touch switches or power cord with wet hands.

► Do not open the housing while the LightCycler® 480 Instrument is connected to the

main power supply.

► Never clean the instrument without turning the instrument power switch off and

disconnecting the power cord.

► Users may replace fuses and the Xenon lamp if they follow the procedures described in

in this Operator’s Manual. Any other electrical modiﬁcation is not allowed and could

render the warranties on the LightCycler® 480 Instrument null and void.

► Only authorized service personnel are allowed to perform service or repairs required

for this unit.

► Always wear safety goggles and gloves when dealing with toxic, caustic or infectious

materials.

► This product includes an internal constituent containing a Substance of Very High

Concern (SVHC), Lead (CAS 7439-92-1), in a concentration above 0.1% weight by

weight, as identiﬁed under REACH and added to the Candidate List. There is no direct

exposure to the substance when the instrument is operated according to the instruc-

tions for use.

17

Prologue

Warnings and Precautions

Do not open the block cycler compartment during operation to avoid injury to hands.

The equipment has mechanical parts that are operating within the block cycler.

Personal injury and infection due to sharps, rough edges, and/or moving parts is possible.

Good Laboratory Practice can reduce the risk of injury. Be aware of your laboratory

environment, be well-prepared, and follow the instructions for use. Some areas of the

instrument may have sharps, rough edges, and/or moving parts. Wear personal pro-

tective equipment to minimize the risk of injury from bodily contact with such parts,

especially in less accessible areas, or while cleaning the instrument. Your personal pro-

tective equipment should be appropriate to the degree and type of potential hazard

(e.g., suitable lab gloves, eye protection, lab coat, and footwear).

Although working with highly puriﬁed nucleic acids, for your own safety, consider all

biological material as potentially infectious. Handling and disposal of such material

should be performed according to local safety guidelines.

► Spills should be immediately disinfected with an appropriate disinfectant solution

to avoid spreading contamination to laboratory personnel or equipment.

► Please refer to section Maintenance to ﬁnd instructions for cleaning the

LightCycler® 480 Instrument.

The multiwell plate holder, the thermal block cycler, the block cycler cover, and the

Xenon lamp are hot while the instrument is operating.

General Precautions

The LightCycler® 480 System is equipped with software, enabling the user of the prod-

uct to connect it with a network. Roche draws the attention of the user to the fact that

such connection may have an adverse effect on the product’s integrity, e.g., due to an

infection of the product with malicious code (viruses, Trojan horses, etc.) or access

by unauthorized third parties (e.g., intrusion by attackers). Roche therefore highly

recommends to protect the product against such risks by taking appropriate and state-

of-the-art action.

As the product is not intended to be used within networks without an appropriate ﬁre-

wall and has not been designed for such use, Roche assumes no liability in that regard.

All Instruments connected to the customer network must be protected with a Roche

ﬁrewall. For further information on this ﬁrewall and/or the Roche network security

concept, please contact your local Roche representative.

In the event the user connects the product with any network without using a ﬁrewall,

Roche cannot offer any product support regarding any problem resulting from such

network connection. In case of a standalone use of the software of the product on or in

connection with other IT components (e.g., installation on other PCs), Roche assumes

no liability with respect to any interference of the user’s networks and/other IT compo-

nents such use might have. Roche’s liability for the proper functioning of the software

under the respective license and/or purchase agreements with the user shall remain

unaffected.

To improve the security of the Roche systems, a Roche provided ﬁrewall must be in-

stalled. From the date of implementation mentioned in this notiﬁcation all new sys-

tems connected to a network shall be installed with the hardware ﬁrewall provided by

Roche. Contact your local Roche representative for detailed information on ﬁrewall

products from Roche.

18

LightCycler® 480 Instrument — Software Version 1.5

Warnings and Precautions

The LightCycler® 480 Control Unit belongs to the instrument. Installation of addi-

tional software on the LightCycler® 480 Instrument control unit presents the risk of

interference with LightCycler® 480 Software and LightCycler® 480 Software modules,

and could affect result security. The windows image of the control unit provides certain

security and a default Anti-virus software is installed. However, it is essential to take

precautions to ensure that any device, connected to the control unit is checked against

virus.

► One control unit is required to operate one LightCycler® 480 Instrument.

► Make sure the main switch is freely accessible.

► Incorrect location can cause incorrect results and damage to the equipment parts.

Follow the installation instructions carefully. Moving the instrument must be per-

formed only by qualiﬁed Roche service personnel.

► Electrical sparks can cause an explosion. Keep all potentially inﬂammable or explosive

material (for example, anesthetic gas) away from the instrument. Spraying liquid on

electrical parts can cause a short circuit and result in a ﬁre.

► Keep the cover closed while the instrument is connected to the mains and do not

use sprays in the vicinity of the LightCycler® 480 Instrument. During ﬁreﬁghting

operations, disconnect the LightCycler® 480 Instrument from the mains.

► Do not manipulate the instrument.

Electrical Safety

The LightCycler® 480 Instrument is designed in accordance with Protection Class I

(IEC). The chassis/housing of the instrument is connected to protection earth (PE)

by means of a cord. For protection against electrical shock hazards, the instrument

must be directly connected to an approved power source such as a three-wire grounded

receptacle for the 230V line. Where an ungrounded receptacle is encountered, a quali-

ﬁed electrician must replace it with a properly (PE) grounded receptacle in accordance

with the local electrical code. An extension must not be used. Any break in the electri-

cal ground path, whether inside or outside the instrument, could create a hazardous

condition.

Under no circumstances should the user attempt to modify or deliberately defeat the

safety features of this instrument. If the power cord becomes cracked, frayed, broken,

or otherwise damaged, it must be replaced immediately with the equivalent part from

Roche Diagnostics.

Warning should be taken seriously. Misuse of the instrument and accessories may

result in harmful consequences.

19

Prologue

Disposal of the Instrument

IX Disposal of the Instrument

Disposal Recommendations

All electrical and electronic products should be disposed off separately from the

municipal waste system. Proper disposal of your old appliance prevents potential negative

consequences for the environment and human health.

The instrument must be treated as biologically contaminated-hazardous waste.

Decontamination (i.e., a combination of processes, including cleaning, disinfection

and/or sterilization) is required before reuse, recycling or disposal. Dispose the instru-

ment according to local and/or labor regulations. For more information contact your

local Roche Support personnel.

Prior to disposal, remove any information stored on the control unit. Components

of your control unit such as the computer, monitor, keyboard, etc. which are marked

with the crossed-out wheeled bin symbol are covered by the European Directive

2012/19/EU of the European Parliament and of the Council of 4 July 2012 on waste

electrical and electronic equipment (WEEE). These items must be disposed off via

designated collection facilities appointed by government or local authorities. For more

information about disposal of your old product, please contact your city ofﬁce, waste

disposal service or your local Roche Support personnel.

Constraint

It is left to the responsible laboratory organization to determine whether control unit

components are contaminated or not. If contaminated, treat in the same way as the

instrument.

20

LightCycler® 480 Instrument — Software Version 1.5

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