Tyan S5539 User manual

http://www.tyan.com

1

S5539

Version 1.0

Copyright

this manual may be reproduced or translated without prior written consent from

MiTAC International Corporation.

Trademark

All registered and unregistered trademarks and company names contained in this

manual are property of their respective owners including, but not limited to the

following.

TYAN

®

is a trademark of MiTAC International Corporation.

Intel

®

is a trademark of Intel

®

Corporation.

AMI, AMI BIOS are trademarks of AMI Technologies.

Microsoft

®

, Windows

®

are trademarks of Microsoft Corporation.

Winbond

®

is a trademark of Winbond Electronics Corporation.

Notice

Information contained in this document is furnished by MiTAC International

Corporation and has been reviewed for accuracy and reliability prior to printing.

MiTAC assumes no liability whatsoever, and disclaims any express or implied

warranty, relating to sale and/or use of TYAN

®

products including liability or

warranties relating to fitness for a particular purpose or merchantability. MiTAC

retains the right to make changes to product descriptions and/or specifications at

any time, without notice. In no event will MiTAC be held liable for any direct or

indirect, incidental or consequential damage, loss of use, loss of data or other

malady resulting from errors or inaccuracies of information contained in this

document.

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2

Contents

S5539 ............................................................................................................ 1

Before you begin… .................................................................................... 3

Chapter 1: Instruction ................................................................................ 4

1.1 Congratulations ................................................................................. 4

1.2 Hardware Specifications .................................................................... 4

1.3 Software Specifications ..................................................................... 7

Chapter 2: Board Installation ..................................................................... 8

2.1 Board Image ...................................................................................... 9

2.2 Block Diagram ................................................................................. 10

2.3 Motherboard Mechanical Drawing ................................................... 11

2.4 Board Parts, Jumpers and Connectors ........................................... 12

2.5 Installing the Processor and Heatsink ............................................. 18

2.6 Tips on Installing Motherboard in Chassis ...................................... 19

2.7 Installing the Memory ...................................................................... 21

2.8 Attaching Drive Cables .................................................................... 25

2.9 Installing Add-In Cards .................................................................... 26

2.10 Connecting External Devices ........................................................ 27

2.11 Installing the Power Supply ........................................................... 28

2.12 Finishing Up ................................................................................... 28

Chapter 3: BIOS Setup ............................................................................. 29

3.1 About the BIOS ................................................................................ 29

3.2 Main Menu ....................................................................................... 31

3.3 Advanced Menu ............................................................................... 32

3.4 Intel RCSetup Menu ........................................................................ 59

3.5 Server Management ........................................................................ 82

3.6 Security ............................................................................................ 85

3.7 Boot ................................................................................................. 86

3.8 Save & Exit ...................................................................................... 88

Chapter 4: Diagnostics ............................................................................. 90

4.1 Flash Utility ...................................................................................... 90

4.2 AMIBIOS Post Code (Aptio) ............................................................ 91

Appendix I: Fan and Temp Sensors ....................................................... 98

Glossary ................................................................................................... 101

Technical Support .................................................................................. 107

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3

Before you begin…

Check the box contents!

The retail motherboard package should contain the following:

1 x S5539 Motherboard

1 x Rear IO shielding

1 x S5539 Quick Installation Guide

1 x TYAN

®

Driver CD

2 x SATA Single Cable

1 x external USB 3.0 Cable(optional)

IMPORTANT NOTE:

Sales samples may not come with any of the accessories listed above.

We also provide USB 3.0 cable in our optional kit. If you need an external

USB 3.0 cable, please contact your sales representative to help order

accessories.

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4

Chapter 1: Instruction

1.1 Congratulations

You have purchased the powerful TYAN

®

S5539 motherboard, based on the Intel

®

C612 Wellsburg chipset. The S5539 is designed to support single Intel

®

Xeon D-

1541Soc (Broadwell-DE) Series processors, and Up to 64GB UDIMM/128GB

RDIMM/ DDR4 memory. Leveraging advanced technology from Intel

®

, the S5539 is

capable of offering scalable 32 and 64-bit computing, high-bandwidth memory

design, and lightning-fast PCI-E bus implementation.

The S5539 not only empowers you in today‟s demanding IT environment but also

offers a smooth path for future application upgradeability. All of these rich feature

sets provide the S5539 with the power and flexibility to meet demanding

requirements for today‟s IT environments.

Remember to visit the TYAN

®

website at http://www.tyan.com. There you can find

all the information on all TYAN

®

products as well as all the supporting documentation,

FAQs, Drivers and BIOS upgrades.

1.2 Hardware Specifications

TYAN S5539 (S5539GM4NR-D41-2T)

Processor

Supported CPU Series

Intel Xeon processor D-1541 SoC, 8 cores

Thermal Design

Power (TDP) wattage

45W

Memory

Supported DIMM Qty

(4) DIMM slots

DIMM Type / Speed

UDIMM/RDIMM DDR4 2400

Capacity

Up to 64GB/128GB UDIMM/RDIMM

Memory channel

2 Channels

Memory voltage

1.2V

Expansion

Slots

PCI-E

(1) PCI-E Gen2 x4 slot / (1) PCI-E Gen3 x8 slot

Note:

(2) OCP slots for TYAN LAN/SAS Card

LAN

Port Q'ty

(2) 10GbE ports, (2) GbE ports, (1) PHY dedicated

for IPMI

Controller

Intel I210 / Intel X557-AT2

PHY

Realtek RTL8221E

Storage

SATA

Connector

(6) SATA

Controller

Intel Xeon processor D-1540 SoC CPU

Speed

6.0 Gb/s

RAID

RAID 0/1/10/5 (Intel RST)

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5

Graphic

Connector type

D-Sub 15-pin

Resolution

Up to 1920x1200

Chipset

Aspeed AST2400

Input /Output

USB

(4) USB3.0 ports (2 at rear, 2 via cable) / (1) Type-

A USB2.0 port

COM

(2) ports (1 at rear, 1 via cable)

VGA

(1) D-Sub 15-pin VGA port

RJ-45

(2) 10GbE ports, (2) GbE ports, (1) Dedicated for

IPMI

SATA

(6) SATA-III connectors

System

Monitoring

Chipset

Aspeed AST2400

Fan

Total (4) 4-pin headers

Temperature

Monitors temperature for CPU & memory & system

environment

LED

Over temperature warning indicator / Fan & PSU

fail LED indicator

Others

Watchdog timer support

Server

Management

Onboard Chipset

Onboard Aspeed AST2400

AST2400 IPMI Feature

IPMI 2.0 compliant baseboard management

controller (BMC) / Supports storage over IP and

remote platform-flash / USB 2.0 virtual hub

AST2400 iKVM

Feature

24-bit high quality video compression / 10/100 Mb/s

MAC interface

BIOS

Brand / ROM size

AMI / 16MB

Feature

H/W monitoring / SMBIOS 2.7/PnP/Wake on LAN /

PXE boot support / ACPI 3.0/ACPI sleeping states

S4,S5

Physical

Dimension

Form Factor

Micro ATX

Board Dimension

9.6"x9.6" (243.8x243.8mm)

Operating

System

OS supported list

Please refer to our Intel OS supported list.

Regulation

FCC (DoC)

Class A

CE (DoC)

Yes

Operating

Environment

Operating Temp.

10° C ~ 35° C (50° F~ 95° F)

Non-operating Temp.

- 40° C ~ 70° C (-40° F ~ 158° F)

In/Non-operating

Humidity

90%, non-condensing at 35° C

RoHS

RoHS 6/6 Compliant

Yes

Package

Contains

Motherboard

(1) S5539 Motherboard

Manual

(1) Web User's manual / (1) Quick Installation

Guide

Installation CD

(1) TYAN installation CD

http://www.tyan.com

6

TYAN S5539 (S5539GM2NR-D41)

Processor

Supported CPU Series

Intel Xeon processor D-1541 SoC, 8 cores

Thermal Design

Power (TDP) wattage

45W

Memory

Supported DIMM Qty

(4) DIMM slots

DIMM Type / Speed

UDIMM/RDIMM DDR4 2400

Capacity

Up to 64GB/128GB UDIMM/RDIMM

Memory channel

2 Channels

Memory voltage

1.2V

Expansion

Slots

PCI-E

(1) PCI-E Gen2 x4 slot / (1) PCI-E Gen3 x8 slot

Note:

(2) OCP slots for TYAN LAN/SAS Card

LAN

Port Q'ty

(2) GbE ports, (1) PHY dedicated for IPMI

Controller

Intel I210

PHY

Realtek RTL8221E

Storage

SATA

Connector

(6) SATA

Controller

Intel Xeon processor D-1540 SoC CPU

Speed

6.0 Gb/s

RAID

RAID 0/1/10/5 (Intel RST)

Graphic

Connector type

D-Sub 15-pin

Resolution

Up to 1920x1200

Chipset

Aspeed AST2400

Input /Output

USB

(4) USB3.0 ports (2 at rear, 2 via cable) / (1) Type-

A USB2.0 port

COM

(2) ports (1 at rear, 1 via cable)

VGA

(1) D-Sub 15-pin VGA port

RJ-45

(2) GbE ports, (1) Dedicated for IPMI

SATA

(6) SATA-III connectors

System

Monitoring

Chipset

Aspeed AST2400

Fan

Total (4) 4-pin headers

Temperature

Monitors temperature for CPU & memory & system

environment

LED

Over temperature warning indicator / Fan & PSU

fail LED indicator

Others

Watchdog timer support

Server

Management

Onboard Chipset

Onboard Aspeed AST2400

AST2400 IPMI Feature

IPMI 2.0 compliant baseboard management

controller (BMC) / Supports storage over IP and

remote platform-flash / USB 2.0 virtual hub

AST2400 iKVM

Feature

24-bit high quality video compression / 10/100 Mb/s

MAC interface

BIOS

Brand / ROM size

AMI / 16MB

Feature

H/W monitoring / SMBIOS 2.7/PnP/Wake on LAN /

PXE boot support / ACPI 3.0/ACPI sleeping states

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7

S4,S5

Physical

Dimension

Form Factor

Micro ATX

Board Dimension

9.6"x9.6" (243.8x243.8mm)

Operating

System

OS supported list

Please refer to our Intel OS supported list.

Regulation

FCC (DoC)

Class A

CE (DoC)

Yes

Operating

Environment

Operating Temp.

10° C ~ 35° C (50° F~ 95° F)

Non-operating Temp.

- 40° C ~ 70° C (-40° F ~ 158° F)

In/Non-operating

Humidity

90%, non-condensing at 35° C

RoHS

RoHS 6/6 Compliant

Yes

Package

Contains

Motherboard

(1) S5539 Motherboard

Manual

(1) Web User's manual / (1) Quick Installation

Guide

Installation CD

(1) TYAN installation CD

1.3 Software Specifications

For the latest AST2400 User‟s Guide and OS (operation system) support, please

visit the Tyan‟s Web site at http://www.tyan.com for the latest information

http://www.tyan.com

8

Chapter 2: Board Installation

You are now ready to install your motherboard.

How to install our products right… the first time

The first thing you should do is read this user‟s manual. It contains important

information that will make configuration and setup much easier. Here are some

precautions you should take when installing your motherboard:

(1) Ground yourself properly before removing your motherboard from the

antistatic bag. Unplug the power from your computer power supply and

then touch a safely grounded object to release static charge (i.e. power

supply case). For the safest conditions, MiTAC recommends wearing a

static safety wrist strap.

(2) Hold the motherboard by its edges and do not touch the bottom of the

board, or flex the board in any way.

(3) Avoid touching the motherboard components, IC chips, connectors,

memory modules, and leads.

(4) Place the motherboard on a grounded antistatic surface or on the antistatic

bag that the board was shipped in.

(5) Inspect the board for damage.

The following pages include details on how to install your motherboard into your

chassis, as well as installing the processor, memory, disk drives and cables.

Caution!

1. To avoid damaging the motherboard and associated

components, do not use torque force greater than

7kgf/cm (6.09 lb/in) on each mounting screw for

motherboard installation.

2. Do not apply power to the board if it has been

damaged.

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9

2.1 Board Image

S5539GM4NR-D41-2T

This picture is representative of the latest board revision available at the time of

publishing. The board you receive may not look exactly like the above picture.

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10

2.2 Block Diagram

S5539 Block Diagram

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11

2.3 Motherboard Mechanical Drawing

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12

2.4 Board Parts, Jumpers and Connectors

This diagram is representative of the latest board revision available at the time of

publishing. The board you receive may not look exactly like the above diagram. The

DIMM slot numbers shown above can be used as a reference when reviewing the

DIMM population guidelines shown later in the manual. For the latest board revision,

please visit our web site at http://www.tyan.com.

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13

Motherboard Components

Connectors

1. LAN port#5 (IPMI) and USB 3.0 ports

14. 4-pin Fan Connector(J24)

2. VGA Port & COM Port

15. 7-pin Vertical SATA3.0 Connector (SATA5)

3. LAN Port#3(LAN3)&LAN Port#4(LAN4)

16. 7-pin Vertical SATA3.0 Connector (SATA4)

4. LAN Port#1(LAN1)&LAN Port#2 (LAN2)

17. 7-pin Vertical SATA3.0 Connector (SATA3)

5. COM2 Header

18. 7-pin Vertical SATA3.0 Connector (SATA2)

6. TYAN Module Header

19. 7-pin Vertical SATA3.0 Connector (SATA1)

7. Fan Header for BB Fan Board(J4)

20. 7-pin Vertical SATA3.0 Connector (SATA0)

8. 4-pin Fan Connector(J19)

21. SATA SGPIO Pin Header for SATA (SGPIO1)

9. 4-pin Fan Connector(J24)

22. Vertical Type-A USB2.0 Connector (USB1)

10. Front Panel Connector(FPIO)

23. PSMI Connector (J16)

11. NGFF (M.2 connector) (J27)

24. 4-pin Fan Connector(J17)

12. NGFF (M.2 connector) (J26)

25.24-pin Power Connector (PWR1)

13. USB3.0 Header (USB3_1)

26. IPMB Pin Header (J3)

Sockets/Chipset/Buttons

A CPU & Heatsink

E AST2400 (U16)

B BMC Socket (U14)

F Intel i210 (U12)

C BIOS Socket (E1)

G Intel i210 (U11)

D Battery Socket (BT1)

H Intel X557phy (U28)

I X557 phy EEPROM chipset(U13)

J I210 EEPROM Chipset(U15)

K I210 EEPROM Chipset(U18)

L Broadewell-DE LAN controller EEPROM chipset

(U45)

Buttons and LEDs

SW1 ID LED Button

ID LED (LED1)

SW3 Power Button

DIMM Fault LED (LED2/3/4/5)

SW2 Reset Button

M.2 Action LED (LED10/11)

CAT ERR LED (CAT_LED1)

PSU Alert LED (PSU_LED1)

BMC Heart Beat LED (BMC_LED1)

Headers

a Intrusion Switch Header (2PHD_3)

c LAN2 LED Header (2PHD_1)

b LAN1 LED Header (2PHD_2)

d RTC Clear CMOS set (3PHD_1)

Slots

I PCI-e Slot#1(Gen3 x 8link, open-end

type)(J6)

III OCP slot for TYAN LAN/SAS card (OCP1) (J8)

II PCI-e Slot#2(Gen2 x 4link, open-end

type)(J5)

IV OCP slot for TYAN LAN/SAS card (OCP2) (J15)

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14

SYS_FAN1/2/3/4_FAN: 4-Pin FAN Connector

1

2

3

4

Signal

GND

+12V

FAN_TACH

FAN_PWM

Use this header to connect the cooling fan to your motherboard to keep the

system stable and reliable.

Note: A 4-pin fan is required for fan speed control.

FPIO: Front Panel Connector

Signal

PWR LED+

1

2

FP_PWR

KEY

3

4

ID_LED+

PWRLED-

5

6

ID_LED-

HDDLED+

7

8

FAULT_LED1-

HDDLED-

9

10

FAULT_LED2-

PWR_SW#

11

12

LAN1_ACTLED+

GND

13

14

LAN1_ACTLED-

RST_SW#

15

16

SMB S SDA

GND2

17

18

SMB S SCL

SYS_ID_SW#

19

20

INTRUSION#

TEMP_SENSOR

21

22

LAN2_ACTLED+

NMI_SW#

23

24

LAN2_ACTLED-

J16: PSMI Connector

1

2

3

4

5

Signal

SMB_CLK

SMB_DAT

SMB_ALERT#

GND

V3P3

USB3_1: Front USB3.0 Header

Signal

+5V

1

2

P0_RX_N

P0_RX_P

3

4

GND

P0_TX_N

5

6

P0_TX_P

GND

7

8

P0_N

P0_P

9

10

OC_N

P1_P

11

12

P1_N

GND

13

14

P1_TX_P

P1_TX_N

15

16

GND

P1_RX_P

17

18

P1_RX_N

+5V

19

20

Key

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15

USB1: Vertical (Type_A) USB2.0 Connector

1

2

3

4

Signal

VCC

USBD-

USBD+

GND

J4: Front Fan Connector (Reserved for Barebone)

Signal

TACH1

1

2

TACH6

TACH2

3

4

TACH7

TACH3

5

6

TACH8

TACH4

7

8

TACH9

TACH5

9

10

TACH10

GND

11

12

KEY

PWM2

13

14

PWM1

TACH11

15

16

SMB_DATA

TACH12

17

18

SMB_CLK

VCC3_AUX

19

20

PWM3

SATA0~5 : 7-pin vertical SATA3.0 Connector(Blue)

7

1

Name

TYPE

Description

S1

GND

Gound

S2

TX+

+Different Tranmit Signal

S3

TX-

-Different Transmit Signal

S4

GND

Gound

S5

RX-

-Differential Transmit Signal

S6

RX+

+Differential Transmit Signal

S7

GND

Gound

P1

Power

Vcc

P2

GND

J11: TYAN Module Header

Signal

P3V3

1

2

FRAME_N

LAD0

3

4

KEY

LAD1

5

6

PLT_RST_N

LAD2

7

8

GND

LAD3

9

10

CLK_33M

DBG_SERIRQ

11

12

GND

DBG_PRES_N

13

14

VCC3_AUX

ADDR_MB

15

16

PCH_PP_EN

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16

COM2: COM Header

Signal

DCD

1

2

DSR

SIN

3

4

RTS

SOUT

5

6

CTS

DTR

7

8

RI

GND

9

10

KEY

J3: IPMB Connector

Signal

BMC_SMB_DATA

1

2

GND

BMC_SMB_CLK

3

4

NC

2PHD_3: Chassis Intrusion Header

Open (Default)

Short

1

2

Signal

BDX_INTRUDER_N

GND

Open: Use this header to disable the system chassis

intrusion alarm.

Short: Use this header to trigger the system chassis

intrusion alarm.

2PHD_1: LAN2 LED Header

1

2

Signal

LED_R_LAN1_G+

X557_LINK1_ACT_N

2PHD_2: LAN1 LED Header

1

2

Signal

LED_R_LAN0_G+

X557_LINK0_ACT_N

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17

3PHD_1: System RTC Clear CMOS set

1

2

3

Sig

nal

RST_SRTCR

ST_N

RST_RTCRST_N

Ground

Pin 1-2 Closed: Normal Mode (Default)

Pin 2-3 Closed: BIOS Reset Mode

Caution:

The jumpers are only using for engineering debug. We don‟t

suggest customers change the jumpers‟ position, which may

cause unable to boot device.

SW1: ID LED Button

Signal

FP_IDLED_BTN_N

1

2

GND

SW2: Reset Button

You can reset the system by using this button

SW3: Power Button

You can power on the system by using this button

ID LED: ID LED

LED1

Rear

ID_LED

Signal

+

P3V3_AUX

-

ID_SW_L

State

Color

Description

On

Blue

System identified

Off

System not identified

NOTE: The ID LED can be activated remotely using IPMI.

Please visit the TYAN Web Site at http://www.tyan.com to

download the latest IPMI Configuration Guide for more details.

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18

2.5 Installing the Processor and Heatsink

The types of processors supported by the S5539 are listed in the 1.2 Hardware

Specifications section on page 4. Check our website at http://www.tyan.com for

the latest list of validated Intel

®

processors for this specific motherboard.

NOTE: MiTAC is not liable for damage as a result of operating an

unsupported configuration.

Processor Installation (for Intel Broadwell-DE CPU)

When you receive the motherboard, both Intel

®

Broadwell-D processors and heat

sinks have been installed in advance in the factory.

Please note that the motherboard may not look exactly like the one you purchased.

Therefore, the illustrations should be held for your reference only.

Heat sink Installation

The CPU heat sink will ensure that the processor do not overheat and continue to

operate at maximum performance for as long as you own them. An overheated

processor is dangerous to the motherboard. The processors will overheat within

seconds, enter thermal protection, and shut down if heat sinks are not installed.

NOTE：The heat sink also has been preinstalled, so the S5539 motherboard when

you received has been installed with CPU and heat sink.

For the safest method of installation and information on choosing the appropriate

heat sink, using heat sinks validated by Intel

®

. Please refer to the Intel

®

website:

http://www.intel.com

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19

2.6 Tips on Installing Motherboard in Chassis

Before installing your motherboard, make sure your chassis has the necessary

motherboard support studs installed. These studs are usually metal and are gold in

color. Usually, the chassis manufacturer will pre-install the support studs. If you are

unsure of stud placement, simply lay the motherboard inside the chassis and align

the screw holes of the motherboard to the studs inside the case. If there are any

studs missing, you will know right away since the motherboard will not be able to be

securely installed.

Note: Be especially careful to look for extra stand-offs. If there are any stand-offs

present that are not aligned with a mounting hole on the motherboard, it will likely

short components on the back of the motherboard when installed. This will cause

malfunction and/or damage to your motherboard.

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20

Some chassis include plastic studs instead of metal. Although the plastic studs are

usable, MiTAC recommends using metal studs with screws that will fasten the

motherboard more securely in place.

Below is a chart detailing what the most common motherboard studs look like and

how they should be installed.

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Tyan S5539 User manual

Tyan S5539 User manual

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