Thermo Fisher Scientific Accela Open Autosampler User guide

Category
Software
Type
User guide
Accela Open Autosampler
User Guide for LC Devices
60357-97101 Revision D December 2013
© 2013 Thermo Fisher Scientific Inc. All rights reserved.
Exactive, Foundation, LCquan, and MSQ are trademarks, and Accela, LCQ, LCQ Fleet, LTQ, LXQ,
Thermo Scientific, and Xcalibur are registered trademarks of Thermo Fisher Scientific Inc. in the United
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Inc. Kalrez is a registered trademark of E.I. du Pont de Nemours & Company. Ryton is a registered trademark
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Corporation.
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document is strictly prohibited, except with the written authorization of Thermo Fisher Scientific Inc.
The contents of this document are subject to change without notice. All technical information in this
document is for reference purposes only. System configurations and specifications in this document supersede
all previous information received by the purchaser.
This document is not part of any sales contract between Thermo Fisher Scientific Inc. and a purchaser. This
document shall in no way govern or modify any Terms and Conditions of Sale, which Terms and Conditions of
Sale shall govern all conflicting information between the two documents.
Release history: Revision A, Apr 2010; Revision B, Mar 2011; Revision C, Jan 2013; Revision D, Dec 2013
Software version: Thermo Foundation (see page xi); Thermo Xcalibur 2.1 or later; Thermo LC Devices 2.5.0
or later. Firmware version (see page xii).
For Research Use Only. Not for use in diagnostic procedures.
Regulatory Compliance
Thermo Fisher Scientific performs complete testing and evaluation of its products to ensure full compliance with
applicable domestic and international regulations. When the system is delivered to you, it meets all pertinent
electromagnetic compatibility (EMC) and safety standards as described in the next section or sections by product name.
Changes that you make to your system may void compliance with one or more of these EMC and safety standards.
Changes to your system include replacing a part or adding components, options, or peripherals not specifically
authorized and qualified by Thermo Fisher Scientific. To ensure continued compliance with EMC and safety standards,
replacement parts and additional components, options, and peripherals must be ordered from Thermo Fisher Scientific
or one of its authorized representatives.
EMC Directive 2004/108/EC
EMC compliance has been evaluated by CTC Analytics for the HTC PAL™ autosampler.
Low Voltage Safety Compliance
Low Voltage Safety Compliance has been evaluated by CTC Analytics for the HTC PAL autosampler.
This device complies with Low Voltage Directive 2006/95/EC and harmonized standard EN 61010-1:2001,
IEC 61010-1:2001, ANSI/UL 61010 A-1:2004, CAN/CSA 22.2 61010-1:2004.
FCC Compliance Statement
IEC 61326-1:2005 IEC 61326-2-6:2005
EN 61326-1:1997, A1:1998 CISPR 22:2005, A1:2005, A2:2006
FCC Class A, CFR 47 Part 15:2003
THIS DEVICE COMPLIES WITH PART 15 OF THE FCC RULES. OPERATION IS SUBJECT TO
THE FOLLOWING TWO CONDITIONS: (1) THIS DEVICE MAY NOT CAUSE HARMFUL
INTERFERENCE, AND (2) THIS DEVICE MUST ACCEPT ANY INTERFERENCE RECEIVED,
INCLUDING INTERFERENCE THAT MAY CAUSE UNDESIRED OPERATION.
CAUTION Read and understand the various precautionary notes, signs, and symbols contained inside
this manual pertaining to the safe use and operation of this product before using the device.
Notice on Lifting and Handling of
Thermo Scientific Instruments
For your safety, and in compliance with international regulations, the physical handling of this Thermo Fisher Scientific
instrument requires a team effort to lift and/or move the instrument. This instrument is too heavy and/or bulky for one
person alone to handle safely.
Notice on the Proper Use of
Thermo Scientific Instruments
In compliance with international regulations: This instrument must be used in the manner specified by Thermo Fisher
Scientific to ensure protections provided by the instrument are not impaired. Deviations from specified instructions on
the proper use of the instrument include changes to the system and part replacement. Accordingly, order replacement
parts from Thermo Fisher Scientific or one of its authorized representatives.
Notice on the Susceptibility
to Electromagnetic Transmissions
Your instrument is designed to work in a controlled electromagnetic environment. Do not use radio frequency
transmitters, such as mobile phones, in close proximity to the instrument.
For manufacturing location, see the label on the instrument.
WEEE Compliance
This product complies with the European Unions Waste Electrical & Electronic Equipment (WEEE) Directive
2002/96/EC. It is marked with the following symbol:
Thermo Fisher Scientific has contracted with one or more recycling or disposal companies in each European Union
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www.thermoscientific.fr/rohs.
WEEE Konformität
Dieses Produkt entspricht der EU Waste Electrical & Electronic Equipment (WEEE) Richtlinie 2002/96/EC. Es ist
mit dem folgenden Symbol gekennzeichnet:
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getroffen, damit dieses Produkt durch diese Firmen wiederverwertet oder entsorgt werden kann. Weitere
Informationen finden Sie unter www.thermoscientific.de/rohs.
Conformité DEEE
Ce produit est conforme avec la directive européenne (2002/96/EC) des Déchets d'Equipements Electriques et
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sur la page www.thermoscientific.fr/rohs.
Thermo Scientific Accela Open Autosampler User Guide vii
C
Preface . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix
Related Documentation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . x
System Requirements . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xi
Supported Firmware Versions. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . xii
Cautions and Special Notices . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xiii
Contacting Us . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .xiii
Chapter 1 Getting Connected. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1
Ordering Information . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Setting Up an LC/MS System with the Autosampler. . . . . . . . . . . . . . . . . . . . . . 2
Connecting the Accela Open Autosampler to the Data System Computer. . . . . . 4
System Synchronization Connections . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Connecting the Accela Open Autosampler Interconnect Cable . . . . . . . . . . . . 6
Connecting the Adapter Cable for an Accela Detector or TSQ Series
Mass Spectrometer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Connecting the Accela Pump Adapter Cable . . . . . . . . . . . . . . . . . . . . . . . . . 12
Chapter 2 Getting Started. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .15
Configuring the Accela Open Autosampler . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
Using the Autosampler Control Terminal . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
Selecting the Tray Type. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 20
Changing the Pulse Time Setting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Specifying the Instrument Method Parameters . . . . . . . . . . . . . . . . . . . . . . . . . 22
Viewing the Method Summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29
Chapter 3 Creating Custom Templates and Macros . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .31
Using the Template Editor to Create Custom Templates . . . . . . . . . . . . . . . . . 31
Testing a Custom Template . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34
Viewing the Template Summary . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37
Standard Macros . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 39
Using the Macro Editor to Create Custom Macros . . . . . . . . . . . . . . . . . . . . . . 39
Defining Variables. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 44
Contents
Contents
viii Accela Open Autosampler User Guide Thermo Scientific
Chapter 4 Using the Direct Controls to Operate the Autosampler . . . . . . . . . . . . . . . . . . . . .47
Opening the Direct Control Dialog Box . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
Making Single Injections from the Tune Window. . . . . . . . . . . . . . . . . . . . . . . 48
Changing the Tray Configuration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50
Specifying the Location of the Direct Control Methods . . . . . . . . . . . . . . . . . . 52
Wrapping Direct Control Injections with Additional Macros . . . . . . . . . . . . . . 53
Chapter 5 Using Dynamic Load and Wash (DLW) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .55
Overview. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 55
Cycle Composer Macros or ICC Cycles . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 57
General Considerations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 58
Priming the Solvent Lines, Wash1 and Wash2 . . . . . . . . . . . . . . . . . . . . . . . 59
Standard DLW Injection Cycle . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 60
Fast DLW Injection Cycle. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63
Operating Dynamic Load and Wash (DLW) . . . . . . . . . . . . . . . . . . . . . . . . . . 64
Priming the Solvent Lines . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 65
Location of Solvent and Waste Bottles. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 65
DLW Pumps. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
DLW Actuator/Solenoid . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
DLW Cycle Step-by-Step . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 68
Cycle for Standard Injection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 68
Additional Valve Toggle Step to DLW Standard Cycle . . . . . . . . . . . . . . . . . 82
Cycle for Fast Injection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90
Appendix A Sample Trays . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .103
Tray Types . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 104
Tray Position. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 106
Sample Position. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 107
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .109
Thermo Scientific Accela Open Autosampler User Guide ix
P
Preface
This guide describes how to connect a Thermo Scientific™ Accela™ Open Autosampler to
other devices in the liquid chromatography/mass spectrometry (LC/MS) system and how to
control the autosampler from a Thermo Scientific MS data system, such as Thermo
Xcalibur™.
The Accela Open Autosampler manufactured by CTC Analytics is supplied by Thermo Fisher
Scientific as part of a solution for high-throughput LC/MS applications.
To suggest changes to the documentation or to the Help
Complete a brief survey about this document by clicking the button below.
Thank you in advance for your help.
Contents
Related Documentation
System Requirements
Supported Firmware Versions
Cautions and Special Notices
Contacting Us
Preface
xAccela Open Autosampler User Guide Thermo Scientific
Related Documentation
Thermo LC Devices includes Help and these manuals as PDF files:
Accela Open Autosampler Hardware Manual
Accela Open Autosampler User Guide
To view product manuals
From the Microsoft™ Windows™ taskbar, do the following:
For an LC instrument controlled by a Thermo software application, choose Start >
All Programs > Thermo Instruments > Manuals > LC Devices > Accela.
For the Xcalibur manual set, choose Start > All Programs > Thermo Xcalibur >
Manuals > Xcalibur.
For access to the application Help, follow this procedure.
To view application-specific Help
•From the Thermo Xcalibur Instrument Setup window, choose Help >
Accela Open AS Help.
If information about setting parameters is available for a specific view, page, or dialog
box, click Help or press the F1 key for information about setting parameters.
For more information, visit www.thermoscientific.com.
Preface
Thermo Scientific Accela Open Autosampler User Guide xi
System Requirements
Ensure that the system meets these minimum requirements.
(Windows 7 only) If you receive a server failure error when you try to open the Xcalibur
Instrument Setup window, follow the next procedure.
To resolve a server failure for the Xcalibur data system
1. Verify that the installed versions of Foundation platform and LC Devices are compatible
(see System Requirements).
2. If the installed LC Devices software is compatible with Foundation, go to step 3. If it is
not compatible, do the following:
a. Use the Windows Control Panel to uninstall all of the modules from LC Devices.
b. Install the compatible version of LC Devices.
c. Restart the data system computer.
IMPORTANT Before you install the device driver, ensure that the data system computer
has a compatible version of the Thermo Foundation™ platform as noted in the Thermo LC
Devices x.x.x Release Notes.
System Minimum requirements
Computer 2 GHz processor with 1 GB RAM
•DVD drive
80 GB available on drive C
Video card and monitor capable of 1280 × 1024 resolution
•NTFS format
Software Adobe™ Reader™ 9.0
Microsoft Windows operating system:
Windows 7 Professional (32-bit and 64-bita)
Windows XP Workstation SP3
Thermo Scientific software:
aLC Devices 2.8.0 and later are compatible with Windows 7, 32-bit and 64-bit.
LC Devices Foundation
2.6.0 and later 1.0.2 SP2 and later
2.5.0 SP3 1.0.2 SP2
2.5.0 SP1 or SP2 2.0
2.5.0 1.0.2 SP2
Preface
xii Accela Open Autosampler User Guide Thermo Scientific
3. If the installed LC Devices is compatible with Foundation, do the following:
a. Open the Windows Control Panel.
b. In the top Search box, type Change User Account Control Settings, and then select
this link to open the User Account Control Settings dialog box.
c. Move the slider to the Default position (Figure 1).
d. Click OK.
Figure 1. User Account Control Settings dialog box
Supported Firmware Versions
LC Devices supports firmware version 4.1.2 for the Thermo Scientific Accela Open
Autosampler.
Slider set at the
Default position
Preface
Thermo Scientific Accela Open Autosampler User Guide xiii
Cautions and Special Notices
Make sure you follow the cautions and special notices presented in this guide. Cautions and
special notices appear in boxes; those concerning safety or possible system damage also have
corresponding caution symbols.
This guide uses the following types of cautions and special notices.
Contacting Us
There are several ways to contact Thermo Fisher Scientific for the information you need.
To contact Technical Support
To contact Customer Service for ordering information
CAUTION Highlights hazards to humans, property, or the environment. Each CAUTION
notice is accompanied by an appropriate CAUTION symbol.
IMPORTANT Highlights information necessary to prevent damage to software, loss of
data, or invalid test results; or might contain information that is critical for optimal
performance of the system.
Note Highlights information of general interest.
Tip Highlights helpful information that can make a task easier.
Phone 800-532-4752
Fax 561-688-8736
E-mail us.techsupport.analyze@thermofisher.com
Phone 800-532-4752
Fax 561-688-8731
E-mail us.customer-support.analyze@thermofisher.com
Web site http://www.thermoscientific.com/en/support-landing/support.html
Preface
xiv Accela Open Autosampler User Guide Thermo Scientific
To copy manuals from the Internet
Go to mssupport.thermo.com, agree to the Terms and Conditions, and then click
Customer Manuals in the left margin of the window.
To suggest changes to the Help
Fill out a reader survey online at www.surveymonkey.com/s/PQM6P62.
Send an e-mail message to the Technical Publications Editor at
techpubs-lcms@thermofisher.com.
Thermo Scientific Accela Open Autosampler User Guide 1
1
Getting Connected
The Thermo Scientific Accela Open Autosampler is a high-throughput autosampler
manufactured by CTC Analytics and supplied by Thermo Fisher Scientific. For
high-throughput LC/MS applications, use the Accela Open Autosampler, a Thermo Scientific
or an Agilent™ liquid chromatography (LC) pump, and a Thermo Scientific mass
spectrometer (MS).
This chapter describes the contact closure connections between the Accela Open
Autosampler, one or two Thermo Scientific LC pumps or an Agilent pump, a Thermo
Scientific mass spectrometer, and the Xcalibur data system computer.
Ordering Information
Thermo Fisher Scientific supplies these cables with the Accela Open Autosampler:
Serial communication cable that connects the autosampler to the data system computer
Contact closure cable that connects the autosampler to the Thermo Scientific LC pump
and Thermo Scientific mass spectrometer
CAUTION Follow all of the recommendations given in the Safety Information section of
the CTC Analytics PAL System User Manual. The Safety Information section includes
information on the autosampler’s electrical hazards, lithium battery, and safety labels.
Contents
Ordering Information
Setting Up an LC/MS System with the Autosampler
Connecting the Accela Open Autosampler to the Data System Computer
System Synchronization Connections
1 Getting Connected
Setting Up an LC/MS System with the Autosampler
2Accela Open Autosampler User Guide Thermo Scientific
To order the HTC PAL or HTS PAL autosampler from Thermo Fisher Scientific, see Tab le 1.
Table 2 lists the contact closure cables used to connect an Agilent pump to a Thermo
Scientific mass spectrometer and the autosampler. You can order the DB15 connector × 15
wire cable from Agilent or Thermo Fisher Scientific.
Setting Up an LC/MS System with the Autosampler
Typical stackable setups include placing the autosampler on top of the two pumps, in a
dual-pump setup, and to the left of the mass spectrometer. Ensure that the stackable area for
the autosampler is level, and that system cables behind the autosampler have adequate space.
For information on how to assemble the Accela Open Autosampler and connect the solvent
lines, refer to the Accela Open Autosampler Hardware Manual.
Figure 2 shows the front view of the Accela Open Autosampler. During installation, the
Thermo Fisher Scientific field service engineer connects the following:
LC system to the mass spectrometer
Solvent lines from the injection valve to the LC pump and the Thermo Scientific mass
spectrometer
Table 1. Accela Open Autosampler ordering information
Description Part number
HTC PAL OPTON 13009
HTC PAL with the 98 × 2 mL tray holder OPTON 13010
HTS PAL OPTON 13008
Table 2. Contact closure cables used to connect an Agilent pump
Description Supplier Part number
DB15 connector × 15 wire cable Thermo Fisher Scientific 00012-27716
DB15 connector × 15 wire cable Agilent G1103-61611
PAL Interface Cable for APG Remote
DB15 connector × DB9 connector cable
CTC Analytics CBL 7890
CAUTION To prevent damage to the injection unit during operation, place the
autosampler on a level surface.
1 Getting Connected
Setting Up an LC/MS System with the Autosampler
Thermo Scientific Accela Open Autosampler User Guide 3
Figure 2. Accela Open Autosampler
1 Getting Connected
Connecting the Accela Open Autosampler to the Data System Computer
4Accela Open Autosampler User Guide Thermo Scientific
Connecting the Accela Open Autosampler to the Data System
Computer
The Accela Open Autosampler communicates with the data system computer through the
supplied RS-232 serial communication cable.
To connect the autosampler to the data system computer
Using the RS-232 serial cable supplied with the autosampler, connect the SER 1 port on
the back of the autosampler to the serial port on the back of the data system computer
(Figure 3).
Figure 3. Data system connection (firmware 4.1.2)
System Synchronization Connections
The system interconnect cables and adapter cables that synchronize the run signals for an LC
or LC/MS system with an Accela Open Autosampler depend on the Accela pump model, the
mass spectrometer model, and whether the LC system includes an Accela detector.
Table 3 lists the system interconnect and adapter cables that Thermo Fisher Scientific supplies
with the Accela Open Autosampler or by special order.
AUX 2 POWER FUSEAUX 1INTERFACE 2INTERFACE 1TERMINAL SER1 LAN MODBUS BUZZER WASH
STATION
L
E
D
Autosampler
Data system
computer
DB9 to DB9
serial cable
1 Getting Connected
System Synchronization Connections
Thermo Scientific Accela Open Autosampler User Guide 5
To connect the required cables listed in Table 3, follow these procedures as appropriate:
Connecting the Accela Open Autosampler Interconnect Cable
Connecting the Adapter Cable for an Accela Detector or TSQ Series Mass Spectrometer
Connecting the Accela Pump Adapter Cable
Table 3. Accela Open Autosampler contact closure and adapter cables
Cable Function Part number
Accela Open Autosampler
interconnect cablea
aSupplied with the autosampler
Required for all hardware configurations 60157-63024
Accela detector adapter
cable
Required for hardware configurations
that include one or more of the
following:
Accela detector
TSQ Series or Exactive™ Series MS
60157-63026
Accela Pump adapter
cableb
bAvailable by special order
Required for the discontinued Accela
Pump
60157-63022
Note The autosampler ships with an unlabeled cable that is equivalent to the Accela Open
Autosampler interconnect cable (P/N 60157-63024). This interconnect cable has three
connectors:
The DB15 connector plugs into the INTERFACE 1 port on the back of the
autosampler.
The DB25 connector plugs into the D-Sub 25 port on the back of an Accela 600 or
1250 Pump.
The 2-pin connector connects to the Accela detector adapter cable.
1 Getting Connected
System Synchronization Connections
6Accela Open Autosampler User Guide Thermo Scientific
Connecting the Accela Open Autosampler Interconnect Cable
Figure 4 shows the Accela Open Autosampler interconnect cable.
Figure 4. Accela Open Autosampler interconnect cable (P/N 60157-63024)
To connect the Accela Open Autosampler interconnect cable to the LC or LC/MS
system modules
1. Connect the DB15 connector (near label TO A/S) to the INTERFACE 1 port on the
back panel of the autosampler (Figure 5).
2. Depending on the Accela pump model, do one of the following:
If your LC system includes an Accela 600 or 1250 Pump, connect the DB25
connector (near label TO PUMP) to the D-Sub25 port on the back of the pump
(Figure 5).
If your LC system includes an Accela Pump, see “Connecting the Accela Pump
Adapter Cable” on page 12.
3. Depending on the LC detector or MS setup, do one of the following:
If your LC or LC/MS system includes an Accela detector or a TSQ Series or Exactive
MS, see “Connecting the Adapter Cable for an Accela Detector or TSQ Series Mass
Spectrometer” on page 8.
If your LC/MS system includes an MSQ Plus™ MS or an LTQ™ Series MS, but does
not include an Accela detector, go to step 4.
4. Connect the cable labeled TO MSQ/LTQ/LXQ to the MS. Do one of the following:
For the MSQ Plus MS, connect the cable to the User I/O Start In pins on the back of
the MS (Figure 5).
For the LTQ Series MS, connect the cable to the Peripheral Control Start In pins on
the right side of the MS (Figure 5).
TO MSQ/LTQ/LXQ
TO PUMP 60157-63024 TO A/S
102 cm (40 in.)
305 cm (120 in.)
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Thermo Fisher Scientific Accela Open Autosampler User guide

Category
Software
Type
User guide

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