Thermo Fisher Scientific CTS AAV-MAX Helper-Free AAV User guide

Brand
Thermo Fisher Scientific
Model
CTS AAV-MAX Helper-Free AAV
Type
User guide
For Research Use or Manufacturing of Cell, Gene, or Tissue- Based
Products. CAUTION: Not intended for direct administration into
humans or animals.
CTS™ AAV-MAX Helper-Free AAV Production
System
USER GUIDE
Catalog NumbersA5427701, A5427702, A5427703, A5145401, A5145402, A5145403, A5144001,
A5144002, A5144003, A5416001, A5416002, A5147101, A5147102, A5147103, A5147104, A48400,
A5152101, A5152102, A5152103
Publication NumberMAN0026650
Revision 2.0
Life Technologies Corporation |
7335 Executive Way |
Frederick, Maryland 21704 USA
Products manufactured at this site:
•CTS™ Viral Production Cells 2.0
Thermo Fisher Scientific Baltics UAB |
V.A. Graiciuno 8, LT-02241 |
Vilnius, Lithuania
Products manufactured at this site:
•CTS™ AAV‑MAX Transfection Reagent
•CTS™ AAV‑MAX Transfection Booster
Life Technologies Corporation |
3175 Staley Road |
Grand Island, New York 14072 USA
Products manufactured at this site:
•CTS™ AAV-MAX Lysis Buer
•CTS™ Viral Production Medium
•Viral Production Medium, AGT
•CTS™ Viral‑Plex™ Complexation Buer
•CTS™ AAV‑MAX Enhancer
For descriptions of symbols on product labels or product documents, go to thermofisher.com/symbols-definition.
Revision history:MAN0026650 2.0 (English)
Revision Date Description
2.0 3 August 2023 Added CTS™ AAV-MAX Lysis Buer.
1.0 12 October 2022 New document for CTS™ AAV-MAX Helper-Free AAV Production System.
The information in this guide is subject to change without notice.
DISCLAIMER: TO THE EXTENT ALLOWED BY LAW, THERMO FISHER SCIENTIFIC INC. AND/OR ITS AFFILIATE(S) WILL NOT BE
LIABLE FOR SPECIAL, INCIDENTAL, INDIRECT, PUNITIVE, MULTIPLE, OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR
ARISING FROM THIS DOCUMENT, INCLUDING YOUR USE OF IT.
Important Licensing Information: These products may be covered by one or more Limited Use Label Licenses. By use of these
products, you accept the terms and conditions of all applicable Limited Use Label Licenses.
TRADEMARKS: All trademarks are the property of Thermo Fisher Scientific and its subsidiaries unless otherwise specified. Vi-CELL is a
trademark of Beckman Coulter. Pluronic is a trademark of BASF Corporation..
©2022-2023 Thermo Fisher Scientific Inc. All rights reserved.
Contents
■CHAPTER1Productinformation .................................................. 5
Productdescription ............................................................. 5
Contents and storage ............................................................ 5
Systemcomponents ............................................................. 6
CTS™ Viral Production Cells2.0 ............................................... 6
CTS™ Viral ProductionMedium ............................................... 6
Viral Production Medium, AGT ................................................ 7
CTS™ AAV‑MAX Transfection Reagent ......................................... 7
CTS™ AAV‑MAX Transfection Booster ......................................... 7
CTS™ AAV‑MAXEnhancer ................................................... 7
CTS™ Viral‑Plex™ ComplexationBuer ......................................... 7
CTS™ AAV-MAX LysisBuer ................................................. 7
■CHAPTER2Culture CTS™ Viral Production Cells2.0 ........................... 8
Thaw and establish CTS™ Viral Production Cells2.0 ................................. 8
Guidelines for handlingcells ................................................. 8
Required materials notsupplied .............................................. 8
Thaw CTS™ Viral Production Cells2.0 ......................................... 9
Subculture CTS™ Viral Production Cells2.0 ........................................ 10
Cryopreserve CTS™ Viral Production Cells2.0 ..................................... 11
Prepare conditionedmedium ................................................ 12
Prepare freeze medium(2X) ................................................. 13
■CHAPTER3Transfect CTS™ Viral Production Cells2.0 ........................ 14
Proceduralguidelines ........................................................... 14
Transfectionguidelines ..................................................... 14
Equipmentguidelines ...................................................... 14
Required materials ............................................................. 15
Optimized transfectionconditions ................................................ 15
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 3
Transfectcells ................................................................. 16
Proceduralguidelines ...................................................... 16
Day 0: Prepare and transfectcells ........................................... 17
Harvest particles ............................................................... 18
Proceduralguidelines ...................................................... 18
Harvest AAV particles ...................................................... 19
■CHAPTER4AAV titer measurement byqPCR .................................. 21
Required materials notsupplied ................................................. 21
Proceduralguidelines ........................................................... 22
qPCR AAV titer measurement .................................................... 22
Prepare DNase I/Exonuclease Idigestion ..................................... 22
Prepare Proteinase Kdigestion .............................................. 23
Prepare qPCRsamples ..................................................... 24
Prepare standard curve ..................................................... 24
Prepare qPCR reaction (384-well plate) ....................................... 25
Dataanalysis .............................................................. 26
■CHAPTER5Infectious titer assay for AAV ...................................... 27
Required materials notsupplied ................................................. 27
Perform titer assay for AAV ...................................................... 28
Day 1: Seed HT1080cells .................................................. 28
Day 1: Transduce HT1080cells .............................................. 28
Day 3 or 4: Measure GFP expression by flow cytometry ........................ 30
■APPENDIXAPlasmid ratiooptimization ........................................ 31
■APPENDIXBSafety ............................................................... 32
Chemicalsafety ................................................................ 33
Biological hazardsafety ......................................................... 34
■APPENDIXCDocumentation and support ...................................... 35
Customer and technical support ................................................. 35
Limited product warranty ........................................................ 35
Contents
4CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Product information
IMPORTANT! Before using this product, read and understand the information in the “Safety” appendix
in this document.
Product description
The Gibco™ CTS™ AAV-MAX Helper-Free AAV Production System is a high-yield Adeno-Associated
Virus (AAV) production system based on a clonal HEK293F-derived cell line adapted to the chemically-
defined viral production medium in suspension format. The CTS™ AAV-MAX Helper-Free AAV
Production System includes cells, chemically defined medium, a transfection reagent, a transfection
booster, and a production enhancer, to produce scalable, high-titer adeno-associated viral (AAV)
vectors, for cell and gene therapy applications.
Contents and storage
Table1CTS™ AAV-MAX Helper-Free AAV Production System Components
Contents Cat. No. Amount Storage
CTS™ Viral Production Cells 2.0 A48400 1vial (1.5mL) Liquid nitrogen[1]
CTS™ Viral Production Medium
A5144001 1L bottle
2°C to 8°C; Protect from light.
A5144002 6×1L bottle
A5144003 10L bag
A5416001 20L bag
A5416002 100L bag
CTS™ Viral‑Plex™ Complexation Buer
A5145401 500mLbottle
A5145402 1Lbottle
A5145403 10Lbag
Viral Production Medium, AGT
A5147101 1L
2°C to 8°C; Store dark and dry.
A5147102 10L
A5147103 50L
A5147104 100L
1
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 5
Table 1 CTS AAV-MAX Helper-Free AAV Production System Components(continued)
Contents Cat. No. Amount Storage
CTS™ AAV-MAX Lysis Buer
A5152101 100mLbottle
2°C to 8°C; Protect from light.A5152102 1Lbottle
A5152103 10Lbag
[1] Store the frozen cells in liquid nitrogen immediately upon receipt and until ready to use. Do not store the cells at −80°C.
Component Cat. No. A5427701
(1 L production)
Cat. No. A5427702
(10 L production)
Cat. No. A5427703
(100 L production) Storage Shelf life[1]
CTS™ AAV-MAX Transfection Kit
CTS™ AAV‑MAX
Transfection
Reagent
6mL bottle 60mL bottle 600mL bag
2°C to 8°C.
Protect from
light.
12months
CTS™ AAV‑MAX
Transfection
Booster
3mL bottle 30mL bottle 300mL bag
CTS™ AAV‑MAX
Enhancer 10mL bottle 100mL bottle 1000mL bag
[1] Shelf-Life duration is determined from Date of Manufacture.
System components
CTS™ Viral Production Cells 2.0
Gibco™ CTS™ Viral Production Cells 2.0 are a clonal derivative of the HEK293F cell line and have been
adapted to suspension, high-density culture in CTS™ Viral Production Medium. These cells can be
thawed directly into CTS™ Viral Production Medium.
Cell line characteristics:
• Transformed via culture with sheared human adenovirus 5 DNA
• Does not contain the SV40 large T antigen
• Cell doubling time of <24hours
• Achieves maximum cell densities of >1.2×107cells/mL in shaker flask cultures
• Maximal AAV production can be achieved between cell passages 3 to 25
CTS™ Viral Production Medium
Gibco™ CTS™ Viral Production Medium is a chemically-defined, serum-free, protein-free, animal origin-
free, phenol red-free formulation for growth and transfection of CTS™ Viral Production Cells 2.0. The
medium is formulated with GlutaMAX™ Supplement and does not require further supplementation.
Chapter1Product information
System components
1
6CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Viral Production Medium, AGT
Gibco™ Viral Production Medium, AGT is a chemically-defined, serum-free, protein-free, animal origin-
free, phenol red-free medium for growth and transfection of CTS™ Viral Production Cells 2.0. The Viral
Production Medium, AGT provides the power to achieve high titers, start process development faster
and streamline and/or transfer to manufacturing scale. The Viral Production Medium, AGT is formulated
with GlutaMAX™ Supplement and does not require further supplementation.
CTS™ AAV‑MAX Transfection Reagent
CTS™ AAV‑MAX Transfection Reagent is a chemically-defined, cationic lipid-based reagent that has
been uniquely designed for high eciency co-transfection of multiple DNA plasmids into high-density
CTS™ Viral Production Cells 2.0 with low toxicity.
CTS™ AAV‑MAX Transfection Booster
Gibco™ CTS™ AAV‑MAX Transfection Booster is a chemically-defined reagent that has been uniquely
designed to boost eciency of co-transfection of multiple DNA plasmids into high-density CTS™
Viral Production Cells 2.0. CTS™ AAV‑MAX Transfection Booster works together with CTS™ AAV‑MAX
Transfection Reagent to deliver superior transfection eciency for high-titer AAV vector production.
CTS™ AAV‑MAX Enhancer
Gibco™ CTS™ AAV‑MAX Enhancer is a chemically-defined, serum-free, protein-free formulation that is
designed to enhance AAV vector production in CTS™ Viral Production Cells 2.0.
CTS™ Viral‑Plex™ Complexation Buer
Gibco™ CTS™ Viral‑Plex™ Complexation Buer is a chemically-defined, serum-free, protein-free, phenol-
red free formulation that is designed to facilitate DNA complexation with transfection reagent during
DNA transfection.
CTS™ AAV-MAX Lysis Buer
CTS™ AAV-MAX Lysis Buer is a ready-to-use, chemically defined, Polysorbate 20‑based cell lysis
reagent for the extraction of AAV particles from producer HEK293 cells.
Chapter1Product information
System components 1
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 7
Culture CTS™ Viral Production Cells
2.0
Thaw and establish CTS™ Viral Production Cells 2.0
Guidelines for handling cells
IMPORTANT! Store the frozen cells in liquid nitrogen immediately upon receipt until ready to use. Do
not store the cells at –80°C.
•Avoid subjecting cells to short-term, extreme temperature changes.
•Store cells in liquid nitrogen following receipt.
•Allow the cells to remain in liquid nitrogen for 3 to 4 days before thawing.
•For all cell manipulations, mix cells by gentle swirling and avoid vigorous shaking/pipetting.
•For routine cell culture maintenance, subculture cells every 3 to 4days when the viable cell density
reaches 4–6×106 cells/mL. Do not subculture cells that have not reached early log phase growth
of ≤4×106cells/mL.
Required materials not supplied
Unless otherwise indicated, all materials are available through thermofisher.com. "MLS" indicates that
the material is available from fisherscientific.com or another major laboratory supplier.
Catalog numbers that appear as links open the web pages for those products.
Item Source
125‑mL Erlenmeyer flasks (e.g., Nalgene™ Single-Use PETG Erlenmeyer Flasks with Plain
Bottom: Sterile) 4115-0125
Orbital shaker: (e.g. MaxQ™ HP Tabletop Orbital Shaker) SHKE416HP
Temperature and CO2 controlled incubator (e.g. Large-Capacity Reach- In CO2 Incubator) 3950, 3951, ETO
Reagents and equipment to determine cell viability (e.g., hemocytometer with trypan blue
or cell counter) MLS
2
8CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Thaw CTS™ Viral Production Cells 2.0
1. Add 30 mL of pre-warmed CTS™ Viral Production Medium to a 125‑mLErlenmeyer shaker flask.
2. Remove a vial of CTS™ Viral Production Cells 2.0 from liquid nitrogen and swirl gently in a
37°C water bath for 1 to 2 minutes to thaw the cells rapidly until only a small amount of ice
remains.
Note: Do not submerge the vial in the water.
3. Just before the cells are completely thawed, decontaminate the vial with 70% ethanol before
opening it in a laminar flow hood.
4. Gently invert the cell vial to mix the contents. Uncap the cell vial and transfer 50 µL of cells into
450 µL of Ca2+/Mg2+ free PBS for viability and viable cell density determination by trypan blue dye
exclusion assay.
Note: Trypan blue may interact with components in cell culture media leading to aggregation that
can be misinterpreted as dead cells using typical cell counting instruments and algorithms. Dilution
with PBS is not required during routine cell culture maintenance.
5. Using a 1-, 2-, or 5‑mL pipette, gently transfer the remaining cell volume drop wise to the shake
flask containing the pre-warmed culture medium prepared in step1.
6. Incubate the cells in a 37°C incubator with ≥80% relative humidity and 8%CO2 on an orbital
shaker platform. The use of non-humidified incubators is not recommended due to the significant
loss of volume in the culture flasks by evaporation.
Note: Set the shake speed to 125 ±5 rpm for shakers with a 19‑mm shaking diameter, 120 ±5rpm
for shakers with a 25‑mm shaking diameter and 95 ±5 rpm for shakers with a 50‑mmshaking
diameter.
7. Three to four days post-thaw, determine the viable cell density and percent viability. Cell viability
should be ≥90% with a viable cell density >1×106viable cells/mL.
Note: If the viability is <90% on days 3 to 4 post-thaw, cells may be cultured for up to an
additional 3 days in order to reach the desired viability. Cells should not be subcultured until viable
cell density reaches >1×106viable cells/mL.
8. For subsequent routine cell culture maintenance, subculture cells every 3 to 4days when the viable
cell density reaches 4 to 6×106 viable cells/mL according to Table4.
Note: Do not subculture cells before reaching early log phase growth of ≤4×106cells/mL.
Similarly, do not let cells overgrow above ≥6×106 cells/mL. Modify the initial seeding density to
attain target cell density of 4–6×106viable cells/mL at the time of subculturing.
Chapter2Culture CTS™ Viral Production Cells 2.0
Thaw and establish CTS™ Viral Production Cells 2.0 2
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 9
Subculture CTS™ Viral Production Cells 2.0
CTS™ Viral Production Cells 2.0 are capable of achieving high cell densities. Therefore, it is important
that cells attain a minimum density of 4– 6×106viable cells/mL at the time of subculturing.
1. At the time of subculture, calculate viable cell density.
Note: If using a Vi-CELL™ cell counting instrument, refer to the recommended settings for this cell
line listed in Table2 and Table3.
2. Use the viable cell density to calculate the volume of cell suspension required to seed a new
shaker flask according to the recommended seeding densities in Table4 and the recommended
culture volumes in Table5.
Table2Recommended Vi-CELL™ XR cell counting settings
Parameter Value Parameter Value
Minimum diameter 10 Cell brightness 85
Maximum diameter 30 Cell sharpness 100
Number of images 50 Viable cell spot brightness 65
Aspirate cycles 3 Vialbe cell spot area 5
Trypan blue mixing cycle 3 Minimum circularity 0
Decluster degree Medium — —
Table3Recommended Vi-CELL™ BLU cell counting settings
Parameter Value Parameter Value
Minimum diameter 10 Cell sharpness 7.0
Maximum diameter 30 Viable cell spot brightness 40
Number of images 100 Viable cell spot brightness 5
Aspirate cycles 6 Minimum circularity 0.10
Trypan blue mixing cycle 6 — —
Decluster degree High — —
Table4Recommended seeding densities for routine cell culture maintenance
Sub-culture timing Recommended seeding density
For cells ready 3 days post-subculture 0.5–0.7×106 viable cells/mL (target 0.6×106viable cells/mL)
For cells ready 4 days post-subculture 0.3–0.5×106 viable cells/mL (target 0.4×106viable cells/mL)
Note: Modify the initial seeding density to attain the target cell density of 4–6×106viable cells/mL
at the time of subculturing.
Chapter2Culture CTS™ Viral Production Cells 2.0
Subculture CTS™ Viral Production Cells 2.0
2
10 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Table5Recommended volumes for routine cell culture maintenance
Flask size Culture volume[1] Shake speed
125mL 30mL 125 ±5rpm (19‑mm orbital diameter)
120 ±5rpm (25‑mm orbital diameter)
95 ±5rpm (50‑mm orbital diameter)
250mL 60mL
500mL 120mL
1L 240mL
2L 480mL
2.8L 700–1000mL 90 ±5rpm (19‑mm orbital diameter)
85 ±5rpm (25‑mm orbital diameter)
80 ±5rpm (50‑mm orbital diameter)
[1] If using volumes outside of the recommended range, it is critical to ensure that all cell growth (i.e., doubling times), health (i.e.,
cell diameter, viability), and production levels remain consistent with control conditions. Cell performance is decreased if cell
health is compromised.
3. Transfer the appropriate number of cells to fresh, pre-warmed CTS™ Viral Production Medium in a
shaker flask.
4. Incubate the flasks in a 37°C incubator with ≥80% relative humidity and 8%CO2 on an orbital
shaker platform until the cultures reach a density of 4 to 6×106viable cells/mL.
Note: Cells that are subcultured at densities outside of this early log-phase growth window may
show longer doubling times and lower titers over time. Modify the initial seeding density to attain
the target cell density of 4 to 6×106viable cells/mL at the time of subculturing.
5. Repeat step1 to step3 to maintain or expand cells for transfection.
Cryopreserve CTS™ Viral Production Cells 2.0
CTS™ Viral Production Cells 2.0 can be frozen directly in CTS™ Viral Production Medium with
7.5% DMSO. Alternatively, conditioned cryopreservation medium consisting of 42.5% fresh CTS™ Viral
Production Medium, 50.0%, conditioned medium and 7.5%DMSO can be used.
Note: It is critical that chemical compatibility be maintained throughout the freezing process to
eliminate the potential for plastics leachables/extractables to negatively impact cell health. For
all steps where DMSO is present (with exception only to the pipet tips used for aliquoting
the final cell solution into cryo-vials), glass serological pipettes are suggested to be used, as
polystyrene is generally not compatible with concentrated DMSO. Similarly, DMSO containing
freeze medium must be prepared in polypropylene or other known DMSO compatible bottles and
the final cell suspension in freeze medium must be prepared in polypropylene or other known
DMSO compatible bottles prior to aliquoting into polypropylene freeze tubes. Additionally, all pipets
and bottles may be rinsed with sterile water, PBS or culture medium before use as desired.
Chapter2Culture CTS™ Viral Production Cells 2.0
Cryopreserve CTS™ Viral Production Cells 2.0 2
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 11
Refer to https://tools.thermofisher.com/content/sfs/brochures/D20480.pdf for guidance on chemical
compatibility.
1. Determine the density and volume of cells required for banking cells at a final density of
1×107 viable cells/mL in 1.1 mL total volume. Expand the cells, maintaining a viable cell density of
4–6×106 viable cells/mL, until the desired volume of cells to be banked is ready. Do not use shake
flasks larger than 2 L to culture the cells, as these flasks dier in shape and require altered shaking
speeds and be sure to adhere to the shaking speed, orbital diameter and maximum flask volume
recommendations.
2. While expanding the cells for banking, prepare an additional flask which will be used to generate
conditioned medium. This flask should be prepared and expanded in the same manner as the
flasks used for cell banking.
Note: Based on the total volume of the bank, prepare at least ½volume conditioned medium (i.e.,
If total volume for cell banking is 100 mL, at least 50 mL of conditioned medium will be required).
3. Prepare labels and label the appropriate number of vials. If vials are labeled on a day other than
that of the harvest, store vials in a biosafety cabinet.
Note: To reduce the risk of damaging the cells during freezing procedures, cells pellets will be
resuspended in cold, 100% conditioned medium followed by 1:1 addition of cold freeze medium
with 15% DMSO to reach a final concentration of 7.5% DMSO, 50%conditioned medium, and
42.5% fresh medium. It is critical to resuspend the cell pellets in cold medium free of DMSO.
Note: If use of 100% fresh culture medium for banking cells is desired, cells pellets will be
resuspended in cold, 100% fresh medium followed by a 1:1 addition of cold, 15% DMSO in fresh
cell culture medium to reach a final concentration of 7.5% DMSO and 92.5% fresh medium.
Prepare conditioned medium
All conditioned medium is to be pre-chilled before use in cell banking.
1. Remove conditioned medium flask from incubator and transfer the entire volume of cell suspension
into a sterile polypropylene centrifuge tube or bottle.
2. Centrifuge the cells at 300×g for 10 minutes at 2–8°C.
3. Carefully decant the supernatant into a sterile polypropylene bottle without disturbing the cell
pellet; the decanted supernatant will be used as the conditioned medium.
4. Store the conditioned medium in a 2–8°C refrigerator or on ice for a minimum of 2hours.
5. Discard the cell pellets.
Chapter2Culture CTS™ Viral Production Cells 2.0
Cryopreserve CTS™ Viral Production Cells 2.0
2
12 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Prepare freeze medium (2X)
1. In a sterile polypropylene bottle, prepare the required amount of fresh culture medium
supplemented with 15% DMSO. This represents a 2X freeze medium. It is recommended to use
glass serological pipettes for transferring the concentrated DMSO to the culture medium. Keep
2X DMSO freeze medium cold at 2–8°C or on ice until use.
2. Remove calculated volume of cells from incubation and transfer into sterile polypropylene
centrifuge bottle/tube. Centrifuge the cells at 200×g for 10 minutes at 2–8°C. Carefully decant
the supernatant without disturbing the cell pellets. After removing the supernatant, gently flick the
bottom of the centrifuge tube to loosen the cell pellet.
3. Resuspend the cell pellet by gently pipetting with ~10%volume of conditioned medium using a
wide bore pipet (i.e., If total bank volume is 200 mL, use 20 mL to resuspend cell pellet).
4. Add additional conditioned medium to the centrifuge bottle to obtain a 2X cell stock. For example,
if banking at 1×107 cells/mL prepare a 2X cell stock at 2×107 cells/mL. Gently swirl the bottle to
ensure a homogenous mixture and keep cold on ice or cold blocks.
Note: It is critical that the next steps are performed as quickly as possible to limit the DMSO
exposure time.
5. Using a glass serological pipette, add the calculated volume of cold, 2X freeze medium to the
bottle containing 2X cell stock in conditioned medium.
6. Gently swirl the bottle to ensure a homogenous mixture and keep cold on ice or cold blocks.
At this point the volume should be equal to the total bank volume at a final concentration
of 7.5% DMSO, 50% conditioned medium, and 42.5% fresh medium with a cell density of
1×107cells/mL.
7. Immediately dispense a 1.1mL aliquot of the final cell suspension from step6 into labeled cryo-
vials using a repeater pipette or sterile serological pipettes.
8. Gently swirl the cell suspension to mix before each refill of the multi-dispenser pipette or
serological pipette. Make sure to keep the cell suspension cold during the entire aliquoting
process.
Note: The DMSO in the 2X freeze medium is harmful to the cells so it is important to limit the
amount of DMSO exposure prior to freezing. We recommend keeping the DMSO exposure time
≤ 60 minutes as possible and keeping all reagents cold during this time.
9. Transfer the cryo-vials to isopropanol containing cryo-freezing chambers and store at -80°C for
24–48 hours. Do not store cells at -80°C for more than 48 hours. After 24–48 hours transfer cells to
final storage in vapor phase liquid nitrogen.
This freezing regimen approximates a 1°C per minute cooling in the isopropanol containers to
-80°C followed by a 2°C per minute cooling in vapor phase liquid nitrogen to final storage
temperature. These cooling conditions may be utilized as a basis for controlled rate freezing
protocol design.
Chapter2Culture CTS™ Viral Production Cells 2.0
Cryopreserve CTS™ Viral Production Cells 2.0 2
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 13
Transfect CTS™ Viral Production
Cells 2.0
Procedural guidelines
Transfection guidelines
• Allow freshly thawed cells to recover in culture for three or more passages post-thaw and before
transfection.
• During all cell manipulations, mix the cells by gentle swirling; avoid vigorous mixing/pipetting. Cell
health is critical to maximal performance.
• Gently invert the CTS™ AAV‑MAX Transfection Reagent 4 to 5 times before use to ensure thorough
mixing.
• See Table7 for transfection at various scales.
Equipment guidelines
•For optimal performance, it is important to follow the recommended shaking diameter, shaking
speed, flask size/type, and volume of culture to be transfected provided in this protocol.
•Humidified incubators (≥80% relative humidity) are recommended to reduce evaporation during
AAV production runs. When using multi-well plates, use high-humidity settings if available, as
evaporation can introduce variation and impact results.
•Ensure that the equipment is calibrated for temperature. In some instances, the total heat from
the incubator and the shaker can cause cell culture temperatures to exceed the recommended
ranges and lead to decreased cell growth, clumping or cell death. In such instances, reduce the
temperature setting of the incubator to compensate for heat generated by the shaker.
•Ensure that the equipment is calibrated for CO2. The levels of CO2 should be 8% ±0.5%.
3
14 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Required materials
Unless otherwise indicated, all materials are available through thermofisher.com. "MLS" indicates that
the material is available from fisherscientific.com or another major laboratory supplier.
Item Source
CTS™ Viral Production Cells 2.0 A48400
CTS™ Viral Production Medium A5144001, A5144002, A5144003,
A5416001, A5416002
CTS™ AAV-MAX Transfection Kit A5427701, A5427702, A5427703
CTS™ Viral‑Plex™ Complexation Buer A5145401, A5145402, A5145403
CTS™ AAV-MAX Lysis Buer A5152101
A5152102
A5152103
Disposable, sterile Erlenmeyer flasks (e.g., Nalgene™ Single-Use
PETG Erlenmeyer Flasks with Plain Bottom: Sterile)
125 mL: 4115-0125
500 mL: 4115-0500
1L: 4115-1000
2L: 4115-2000
2.8L: 4115-2800
Orbital shaker: (e.g. MaxQ™ HP Tabletop Orbital Shaker) SHKE416HP
Temperature and CO2 controlled incubator (e.g. Large-Capacity
Reach- In CO2 Incubator) 3950, 3951, ETO
Reagents and equipment to determine viable cell density and
percent viability MLS
Optimized transfection conditions
Table6Reagents required for AAV production
Condition Amount
CTS™ Viral‑Plex™ Complexation Buer 100 µL per mL of culture volume to transfect
Plasmid DNA[1] 1.5 μg per mL total plasmid DNA of culture volume to transfect (i.e.
Transfer plasmid + Rep/Cap plasmid + Helper plamid)
CTS™ AAV‑MAX Transfection Reagent 6μL per mL of culture volume to transfect
CTS™ AAV‑MAX Transfection Booster 3μL per mL of culture volume to transfect
CTS™ AAV‑MAX Enhancer 10μL per mL of culture volume to transfect
Chapter3Transfect CTS™ Viral Production Cells 2.0
Required materials 3
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 15
Table 6 Reagents required for AAV production(continued)
Condition Amount
CTS™ AAV-MAX Lysis Buer 100μL per mL of culture volume to transfect
CTS™ Viral Production Cells 2.0 3×106 cells/mL density at transfection
[1] Optimizing the molar ratio of plasmids based on plasmid size is highly recommended. An example calculation for appropriate
amounts of the 3 plasmids based on plasmid size is depicted in Table 16.
Table7Recommended reagent volumes for transfection at various scales
Vessel type
125‑mL flask 250‑mL flask 1L flask 2L flask 2.8L flask
Number of cells required 90×106180×106720×1061440×1063000×106
Culture volume to transfect 30mL 60mL 240mL 480mL 1000mL
Shake speed[1] 125 ±5 rpm (19 mm orbital diameter)
120 ±5 rpm (25 mm orbital diameter)
95 ±5 rpm (50 mm orbital diameter)
95±5rpm
85±5rpm
80±5rpm
Amount of plasmid DNA 1.5μg total plasmid DNA per mL of culture to transfect
Volume of plasmid DNA[2] 45µL 90µL 360µL 720µL 1.5mL
CTS™ Viral‑Plex™ Complexation Buer to
dilute plasmid DNA
3mL 6mL 24mL 48mL 100mL
CTS™ AAV‑MAX Transfection Reagent 180µL 360µL 1.44mL 2.88mL 6mL
CTS™ AAV‑MAX Transfection Booster 90µL 180µL 720µL 1.44mL 3mL
CTS™ AAV‑MAX Enhancer 300µL 600µL 2.4mL 4.8mL 10mL
Final culture volume ~34mL ~6.8mL ~272mL ~544mL ~1120mL
[1] Recommended shake speed ranges: optimal shake speed should be determined empirically based on the specific laboratory
equipment used.
[2] Assuming a plasmid DNA concentration of 1 mg/mL and a final concentration of 1.5 μg/mL of plasmid DNA.
Transfect cells
Procedural guidelines
•For volumes for transfection at various scales, see Table7.
•Subculture and expand cells until cells reach a density of 4–6×106cells/mL.
•For transfection steps, pre-warming of reagents (CTS™ AAV‑MAX Transfection Reagent, CTS™
AAV‑MAX Transfection Booster, CTS™ AAV‑MAX Enhancer, and CTS™ Viral‑Plex™ Complexation
Buer) to room temperature is not required.
Chapter3Transfect CTS™ Viral Production Cells 2.0
Transfect cells
3
16 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Day 0: Prepare and transfect cells
1. On the day of transfection (Day 0), determine viable cell density and percent viability. Cells should
have reached a density of approximately 4.0–6.0×106 viable cells/mL. Viability should be ≥95% to
proceed with transfection.
2. Dilute the cells from step1 to a final density of 3×106 viable cells/mL with fresh CTS™ Viral
Production Medium. Incubate the cells in a 37°C incubator with a humidified atmosphere of
8%CO2 on an orbital shaker until the DNA/transfection complexation process is completed (step5
to step7). For suggested shake speeds, see Table7.
3. Prepare transfer plasmid DNA, Rep/Cap plasmid DNA and helper plasmid DNA.
a. Use 1.5μg /mL of total plasmid DNA to the culture volume to be transfected. For
recommended volumes at various scales, see Table7.
Note: Plasmid DNA molar ratio optimization based on plasmid size is highly recommended
based on the desired serotype and transfer plasmid information. See Appendix A, “Plasmid
ratio optimization” for example of ratio optimization of 3plasmids DNA.
4. Prepare transfection complexes. For the recommended volumes at various scales, see Table7.
a. Dilute total plasmid DNA from step 4 (e.g., 45μg total DNA to transfect a 30 mL culture) with
CTS™ Viral‑Plex™ Complexation Buer to a final volume of 10% of the culture volume to be
transfected (e.g., 3mLCTS™ Viral‑Plex™ Complexation Buer to transfect a 30 mL culture).
b. Mix by swirling.
c. Gently invert the CTS™ AAV‑MAX Transfection Reagent bottle 4 to 5 times to mix.
d. To a new tube, add neat CTS™ AAV‑MAX Transfection Booster at 3μL per mL of culture
to be transfected (e.g., 90 μLCTS™ AAV‑MAX Transfection Booster to transfect a 30mL
culture) followed by neat CTS™ AAV‑MAX Transfection Reagent at 6μL per mL of culture to be
transfected (e.g., 180μL CTS™ AAV‑MAX Transfection Reagent to transfect a 30 mL culture).
e. Mix by gentle pipetting or gentle swirling (do not vortex).
Note: It is critical to gently pipette the reagents. When using a serological pipettor, the
speed should be turned down to 30–50% of the maximum speed or lower. When using a
micropipette, operate the micropipette slowly. For either type of pipette, after adding liquids,
avoid over-pipetting or vigorous pipetting to mix. If reagents are excessively or vigorously
pipetted during complexation steps, this can impact transfection eciency and AAV titers.
Note: The CTS™ AAV‑MAX Transfection Booster/ CTS™ AAV‑MAX Transfection Reagent
complex is stable for up to 1 hour at room temperature or 2days at 2–8℃.
Chapter3Transfect CTS™ Viral Production Cells 2.0
Transfect cells 3
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 17
f. Add the pre-mixed CTS™ AAV‑MAX Transfection Booster and CTS™ AAV‑MAX Transfection
Reagent (e.g., 90μL CTS™ AAV‑MAX Transfection Booster + 180μL CTS™ AAV‑MAX
Transfection Reagent) from substep4d to the diluted plasmid DNA from substep4a. Mix
by swirling, inversion or gentle pipetting 2 to 3 times (do not vortex).
Note: Excessive or vigorous pipetting can disrupt the plasmid DNA/CTS™ AAV‑MAX
Transfection Booster/ CTS™ AAV‑MAX Transfection Reagent complexes and result in lower
transfection eciency and lower AAV titers.
5. Incubate plasmid DNA/ CTS™ AAV‑MAX Transfection Booster/ CTS™ AAV‑MAX Transfection
Reagent complexes from substep4f at room temperature for 20 to 30 minutes without agitation.
6. Gently transfer the plasmid DNA/CTS™ AAV‑MAX Transfection Booster/ CTS™ AAV‑MAX
Transfection Reagent complexes to the shaker flask(s) prepared in step2 by gentel swirling of
the flask(s).
Optimization of the incubation time of the plasmid DNA/ CTS™ AAV‑MAX Transfection Booster/
CTS™ AAV‑MAX Transfection Reagent complexes can be performed to increase titers. This is
particularly recommended for small or large plasmid sizes.
Note: No additional pipetting is needed to mix the plasmid DNA/CTS™ AAV‑MAX Transfection
Booster/CTS™ AAV‑MAX Transfection Reagent complexes and the cells. Excessive or vigorous
pipetting can disrupt the complexes and stress the cells, resulting in lower transfection eciently
and lower AAV titers.
7. Add CTS™ AAV‑MAX Enhancer to the transfected shake flasks from step6 (i.e. add 300μL to
transfect 30mL of cells). Swirl the flask(s) gently to mix the cells.
8. Incubate the cells in a 37°C incubator with a humidified atmosphere of 8%CO2 on an orbital
shaker for approximately 72 hours. For suggested shake speeds, see Table 5.
Harvest particles
Procedural guidelines
•Handling of AAV particles must be performed as per institutional guidelines. All materials that come
into contact with AAV solution should be appropriately disinfected prior to disposal.
•The CTS™ AAV-MAX Lysis Buer is a 10Xformulation containing 20mMMgCl2 and 1.5MNaCl
that can be added directly to the cell culture to induce lysis. If working with nucleases other than
benzonase, concentrations may need to be optimized.
•Harvest AAV particles 70 to 72 hours post-transfection.
Chapter3Transfect CTS™ Viral Production Cells 2.0
Harvest particles
3
18 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
Harvest AAV particles
1. Add CTS™ AAV-MAX Lysis Buer directly to the culture flask at a 1:10dilution (e.g., 3.3mL of
CTS™ AAV-MAX Lysis Buer to a 30 mL culture volume) and swirl the flask to evenly distribute the
lysis buer.
Note: To perform qPCR titration prior to AAV purification workflow, remove 5 mL from the culture
flask after performing step1 and perform lysis by incubating at 37℃ for 1hour at 250rpm on an
orbital shaker. Proceed to step3.
Note: If proceeding to a AAV purification, add Benzonase endonuclease (final concentration:
90 U/mL) to the remaining culture in the flask from step1, then proceed to step2.
Note: The CTS™ AAV-MAX Lysis Buer contains 20mM MgCl2 and 1.5MNaCl. If working with
nucleases other than benzonase, concentrations may need to be optimized.
2. Incubate the flask at 37°C for at least 2 hours on an orbital shaker (for suggested shake speeds,
see Table5).
Note: Once cells are lysed, the culture will appear to contain visible cell debris.
Note: Lysis incubation times can vary based on AAV production scale. Therefore, it is
recommended to optimize lysis conditions for your experiments prior to moving to large scale.
3. Transfer the cell lysate to an appropriate flask or tube, then centrifuge at 4°C at 13,000×g for
10 min for smaller volumes (microfuge scale) or at 4,500×g for 30 minutes for larger scale of
production.
4. Transfer the supernatant containing crude AAV particles to an appropriate storage container.
5. For qPCR titer measurement, transfer 50 to 100 μL of lysate to a 96-well plate. See Chapter4,
“AAV titer measurement by qPCR”.
Note: It is recommended that multiple replicates for each sample are prepared to account for
qPCR assay variation.
6. Harvested crude AAV particles can be stored at -80°C for long term storage.
Note: To avoid repeated freeze/thaw cycles, virus aliquoting is highly recommended. To thaw
AAV samples, bring the tube to room temperature and mix the AAV sample by gentle pipetting or
inverting. Do not vortex or avoid mixing vigorously.
Note: Crude AAV vectors can temporarily be stored at 4°C for short duration (i.e. overnight). If
samples are stored for extended periods of time at 4°C, precipitation can occur. This is dependent
on AAV serotype and/or production scale. If precipitation is observed, reclarify the samples prior to
proceeding to the next step.
Chapter3Transfect CTS™ Viral Production Cells 2.0
Harvest particles 3
CTS™ AAV-MAX Helper-Free AAV Production System User Guide 19
Note: To disinfect AAV properly, prepare a 10% bleach solution, then disinfect used pipette tips,
serological pipettes and culture flasks before disposal. To discard remaining AAV samples, add
the 10% bleach solution directly to the AAV solution, then incubate for a minimum of 30 minutes
before disposal.
Chapter3Transfect CTS™ Viral Production Cells 2.0
Harvest particles
3
20 CTS™ AAV-MAX Helper-Free AAV Production System User Guide
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Thermo Fisher Scientific CTS AAV-MAX Helper-Free AAV User guide

Brand
Thermo Fisher Scientific
Model
CTS AAV-MAX Helper-Free AAV
Type
User guide
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