Roche cobas infinity central lab User manual

cobas

®

infinity central lab

User Guide - Microbiology module

Version 1.3

Software version 2.0

cobas

®

infinity microbiology module

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

2

Publication information

Edition notice

This publication is intended for operators of the cobas

®

infinity central lab.

Every effort has been made to ensure that all the

information contained in this publication is correct at the

time of publishing. However, the manufacturer of this

product may need to update the publication information

as output of product surveillance activities, leading to a

new version of this publication.

Where to find information The User Assistance contains all information about the

product, including the following:

• Safety

• Routine operation

• Configuration information

The User Guide focuses on routine operation. The

chapters are organized according to the normal operation

workflow.

!

General attention

To avoid incorrect results, ensure that you are familiar

with the instructions and safety information.

r Pay particular attention to all safety notices.

r Always follow the instructions in this publication.

r Do not use the software in a way that is not described

in this publication.

r Store all publications in a safe and easily retrievable

place.

Training Do not carry out operation tasks or maintenance actions

unless you have received training from Roche

Diagnostics. Leave maintenance, installation, or service

that is not described in the manuals to trained Roche

Service personnel.

Screenshots The screenshots in this publication have been added

exclusively for illustration purposes. Configurable and

variable data, such as tests, results, or path names visible

therein must not be used for laboratory purposes.

Publication

version

Software version Revision date Change description

1.0 2.0 June 2016 First edition

1.1 2.0 June 2016 New features of software version 2.0

1.2 2.0 June 2016 Minor updates

1.3 2.0 October 2016 New features of software version 2.0 and new chapters added

y Revision history of User Guide

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

3

Warranty Any customer modification to the system renders the

warranty or service agreement null and void.

For conditions of warranty, contact your local sales

representative or refer to your warranty contract partner.

Always leave software updates to a Roche Service

representative, or perform such updates with their

assistance.

reserved.

License information

cobas

®

infinity central lab software is protected by

contract law, copyright law, and international treaties.

cobas

®

infinity central lab contains a user license

between F. Hoffmann-La Roche Ltd. and a license holder,

and only authorized users may access the software and

use it. Unauthorized use and distribution may result in

civil and criminal penalties.

Open Source and Commercial Software

cobas

®

infinity central lab may include components or

modules of commercial or open-source software. For

further information on the intellectual property and other

warnings, as well as licenses pertaining to the software

programs included in cobas

®

infinity central lab, refer to

the electronic distribution included with this product.

This open source and commercial software and cobas

®

infinity central lab as a whole can constitute a device

regulated in accordance with applicable law. For more

detailed information, refer to the user manual and

labeling.

Please note that the respective authorization is no longer

valid according to the corresponding legislation should

any unauthorized changes be made to cobas

®

infinity

central lab.

Trademarks The following trademarks are acknowledged:

COBAS and LIFE NEEDS ANSWERS are trademarks of

Roche.

All other trademarks are the property of their respective

owners.

Feedback Every effort has been made to ensure that this publication

fulfills the intended use. All feedback on any aspect of

this publication is welcome and is considered during

updates. Contact your Roche representative, should you

have any such feedback.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

4

Contact addresses

Roche Diagnostics GmbH

Sandhofer Strasse 116

68305 Mannheim

Germany

Made in Spain

Distributed in USA by:

Roche Diagnostics

9115 Hague Road

Indianapolis

Indiana, USA

Table of contents 5

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

Table of contents

Publication information 2

Contact addresses 4

Table of contents 5

Intended use 7

Use environment and intended users 8

Symbols and abbreviations 8

Safety classifications 10

System safety information 11

21 CFR Part 11 compliance 16

Interface overview

1 Interface overview

Accessing the software 23

About the software framework 26

Performing basic tasks in the software 28

Filtering, sorting and exporting table

information 36

About the common interface items 40

Routine tasks

2 General tasks

Viewing and assigning comments 47

Printing barcode labels manually 51

Patient management 57

Checking connections 61

Searching for order and patient information 63

Releasing tests or orders 66

3 Pre-analysis

Order and pre-order management 69

Test management 80

Handling samples 82

4 Sample analysis

Printing a worklist 87

Monitoring Microbiology orders and

samples 89

5 Result entry and validation

Entering and editing results manually 95

Entering results manually in the

Microbiology module 97

Declaring results 110

Verifying and validating results in the

Microbiology module 114

List of result entry and validation items in

the Microbiology module 117

6 Post-analysis

Reports 121

Appendix

Index 129

6 Table of contents

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

7

Intended use

The cobas® infinity IT solutions application is intended to

be used for:

• the configuration and connectivity management of

instruments and software systems

• the management of data regarding

- Samples

- Technical validation including automatic release

- Quality Control (both qualitative and quantitative)

- Test results and their entry (offline workplaces)

• the management and storing of information, such as

- Samples Archiving Storage information

- Rule engine for technical validation

- Notifications from any part of the system

- Reagent and Calibrator management

- Turn Around Time management

- Production statistics

In addition to the above intended use, the cobas infinity IT

solutions application is intended for:

• the management of data regarding

- Order Data

- Patient Data

- Medical Validation support

- Result Consolidation and Reporting

- Billing support

• the management and storing of information, such as

- General statistics (Data Warehouse)

- Microbiology workflows and data for:

(Microbiology module)

- human samples

• Microbiology workflows and data for: (Microbiology

module)

- human samples

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

8

Use environment and intended users

The cobas

®

infinity central lab software is intended for

Clinical Laboratories.

You can find different user profiles using the cobas

®

infinity central lab software.

Field Service Engineer (global and local) Field Service Engineers configure the system and master

data (test, test groups, senders, instruments, reports,

interfaces, etc.) according to specific requirements of the

customers with regards to connected hosts, instruments

and sample workflow.

Access level depends on user rights.

Lab Technician Lab technicians utilize the solution to perform technical

validation on patient and QC results, manually edit orders

(add or remove tests, edit patient-demographic data),

enter patient and QC results that have been obtained

from off-line workplaces, print-out patient and QC

reports, archive samples, retrieve samples from the

archive, etc.

Access level depends on specific user rights.

Lab IT Administrator Lab IT Administrators maintain users and authorization,

and maintain tests and senders.

Access level depends on specific user rights.

GP/Hospital doctor/Hospital

nurse/Community nurse

These users are not employers of the laboratory, thus

their access is restricted to the Lab Link module only.

Users enter orders manually within the Lab Link module,

release print-outs of barcode labels for the tubes for

positive patient/sample identification, release print-outs

of reports for the patient for blood drawing, view and print

the patient result report of their patients.

Phlebotomist These users are employers of the laboratory, but their

access is restricted to the Lab Link module only.

Phlebotomists confirm in the system that the samples

have been taken according to the order.

Symbols and abbreviations

Product names Except where the context clearly indicated otherwise, the

following product names and descriptors are used.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

9

Symbols used in the publication

Abbreviations The following abbreviations are used.

Product name Descriptor

cobas

®

infinity central lab

software

cobas

®

infinity general lab

module

cobas

®

infinity emergency

lab

module

cobas

®

infinity lab flow

module

cobas

®

infinity lab link

module

cobas

®

infinity microbiology

module

cobas

®

infinity total quality

management

module

y Product names

Symbol Explanation

o List item

u Related topics containing further information

q

Tip. Extra information on correct use or useful

hints.

r Start of a task

I Extra information within a task

f Result of an action within a task.

c Frequency of a task.

n Duration of a task.

d Materials that are required for a task.

j Prerequisites of a task.

u Topic. Used in cross-references to topics.

p Task. Used in cross-references to tasks.

w

Figure. Used in figure titles and cross-

references to figures.

y

Table. Used in table titles and cross-references

to tables.

z

Equation. Used in cross-references to

equations.

k

Code example. Used in code titles and cross-

references to codes.

[ ] Square bracket. Used in the elements name as

defined by your system administrator

y Symbols used in the publication

Abbreviation Definition

ANSI American National Standards

Institute

EN European standard

n/a not applicable

UPS Uninterruptible Power Supply

y Abbreviations

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

10

Safety classifications

The safety precautions and important user notes are

classified according to the ANSI Z535.6 standard.

Familiarize yourself with the following meanings and

icons.

These symbols and signal words are used for specific

hazards:

WARNING

!

Warning...

r ...indicates a hazardous situation which, if not avoided,

could result in death or serious injury.

CAUTION

!

Caution...

r ...indicates a hazardous situation which, if not avoided,

could result in minor or moderate injury.

NOTICE

Notice...

r ...indicates a hazardous situation that, if not avoided,

may result in damage to the system.

Important information that is not safety relevant is

indicated with the following icon:

q Tip...

...indicates additional information on correct use or useful

tips.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

11

System safety information

Roche Diagnostics has established a series of

recommendations with the aim of allowing the user to

work with the software under safe conditions and

guaranteeing the correct operation and proper

performance of the communication network in which this

product has been installed.

q Read the following recommendations carefully for

the correct operation of the software.

Security

WARNING

!

Secure infrastructure

Risk of privacy violations.

r A secure infrastructure must be established for the

software network and security policies must be

defined to address potential problems or system

failures.

r Access is controlled by a logon. Every access to the

software is registered and logged, including the

unsuccessful ones.

r Pay special attention when configuring the number of

logon attempts, the password expiry period, and

session management.

WARNING

!

Enabled security parameters

r All security parameters (profiles, access restrictions,

etc.) are enabled by default. Remember that disabling

security parameters may lead to potentially major

risks, e.g. unqualified staff may change instruments or

system configurations, or unauthorized users may

access confidential information.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

12

UPS

WARNING

!

UPS usage and software shutdown

Risk of data becoming lost or corrupted in the event of a

power failure

r It is strongly recommended to use a UPS and to

perform regular UPS maintenance.

r It is strongly recommended to keep the journaling

feature activated.

r There should be a standard procedure to shut down

the software. Users must exit the software before

shutting down the computer on a daily basis. Having a

UPS that can perform a safe shutdown installed

mitigates the risk of data loss due to power failure.

CAUTION

!

UPS usage

Risk of data loss in the event of a power failure

r It is strongly recommended to use a UPS.

r It is strongly recommended to keep the journaling

feature activated.

User settings

WARNING

!

Restricting access to critical functions

Risk of confidential information being accessed

r It is recommended to grant users the minimum rights

necessary to perform their tasks to protect

confidential data and configuration items in the

database.

WARNING

!

Access to the software and user accounts

r Access to the software should only be granted to user

who have been trained and assigned a user name and

password. The password must be confidential and

must comply with the usual security principles. It must

be changed periodically to prevent unauthorized

parties from gaining access.

r There must be one account per user. Do not create

generic user accounts to be used by more than one

person. Create a different account for each user, even

if they have the same access rights.

r It is recommended that you develop SOP to ensure

that only qualified staff access the software.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

13

WARNING

!

Passwords, access, and system shutdown

r For security reasons and for patient confidentiality, all

users must exit the software or lock their computer

before leaving their workplace.

r It is recommended to correctly configure the

automatic log-off time.

CAUTION

!

System performance

Risk of delayed results

r To ensure the operation of the system at full capacity,

avoid connecting more users or instruments than your

infrastructure supports.

q System configurations

The preconfigured settings in the system must only be

used as a reference. It is recommended that they are not

used as default settings since they should be modified to

suit the system and the health center requirements.

General

CAUTION

!

Servers and software performance

Risk of delayed results

r Use servers that are correctly dimensioned to the

needs of your installation to guarantee the best

performance of the software.

r It is recommended to configure the servers using a

high availability and data redundancy system. The

existence of a second server prevents data loss in the

event of severe or critical failures in the system.

CAUTION

!

Alarms on validation screens and reports

Risk of incomplete results that could lead to a wrong

diagnosis

r To prevent users from validating results without taking

into account important information, always configure

alarms for validation screens and reports.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

14

WARNING

!

SOP

Risk of results becoming confused

r It is recommended to establish a suitable standard

operating procedure (SOP) to prevent tubes from

being mishandled.

CAUTION

!

Barcodes

Risk of delayed results

r It is recommended to use barcodes for tubes and trays

to easily identify and locate samples.

q All the changes made in the software are recorded

using an audit trace.

Backups

CAUTION

!

Backup protocol

Risk of data loss

r It is strongly recommended to activate regular cache

backup and recovery features (preferably daily).

r It is strongly recommended to store (daily) cache

backup files in a safe place.

r It is strongly recommended to use a hardware

mirroring system

WARNING

!

Backups and updates

r Before upgrading the software, make backups of all

databases and system configurations.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

15

Instruments and reading devices

WARNING

!

The software is not prepared to receive different

units for the same test and host, or from the same

test and different hosts. When receiving the

information, the software applies the test units that

have been configured.

Risk of incorrect results

r Be careful when configuring the test primary and

secondary units. If the units in the software do not

match the ones received from the external host or

instrument, ensure that the correct modification is

applied for every result received.

r If the units change from one message to another for

the same test, you must apply the necessary result

modification in the system to match the test units.

WARNING

!

Repeated values

Risk of incorrect results

r In the event that instruments do not show the time

when results were sent, there is the possibility that

results could be repeated due to data being

transmitted twice and not because a test was

repeated.

q Reading devices

Risk of results being misinterpreted

o It is recommended that you use reading devices

(optical readers, barcode readers, card readers, etc.)

to take results. Check the reading devices are

operating correctly before using them in real

environments.

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

16

21 CFR Part 11 compliance

The Food and Drug Administration (FDA) of the United

States under Title 21 of the US Code of Federal

Regulation Part 11 (21 CFR Part 11) establishes the

requirements to ensure that electronic records and

electronic signatures are trustworthy, reliable and

equivalent to paper records with traditional handwritten

signatures.

cobas

®

infinity central lab provides the capability to

meet the requirements of part 11 compliance if the

system is configured and used properly within the

customer's processes. This section describes the steps

and settings that are necessary to ensure that the

software is configured to meet the requirements of this

regulation.

The final responsibility of 21 CFR Part 11 compliance

relies on the adequate implementation from the customer

ensuring both procedural controls (i.e. Standard

Operating Procedures, training) and administrative

controls.

In case customers need to be compliant with 21CFR Part

11 regulatory requirements the software should be

configured according the customers policies and

procedures. Otherwise, the following parameters are

recommended:

General parameters Administration > General > General parameters

ID Parameter Description Recommended value

1 Accessing to the application via

Direct Access without having to

log on

When accessing the software using a link or

externally, this parameter allows you to access only

the screens marked as accessible without having

to enter the password and user name on the logon

screen.

No (default value)

2 Backup path (Folder) This parameter allows you to configure the

directory where the backups of the application

databases are stored.

Folder path configured

3 Session timeout (min) This parameter allows you to specify how long the

session is kept open (in minutes) since activity was

last detected. Once this time is exceeded, the

software logon screen appears, and the user name

and password must be entered again.

15

4 Direct access session timeout

(min)

This parameter only applies to sessions accessed

from an external environment. This parameter

allows you to specify how long the session is kept

open (in minutes) since activity was last detected.

Once this time is exceeded, the session closes.

15

5 Days configuration trace is kept Indicates the days the configuration trace will be

kept before deleting it.

9999

6 History retention period (d) Days to delete the order traces. 9999

y Parameter configuration for 21 CFR Part 11 compliance

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

17

Reports Administration > Reports > Definition

The following settings must be properly configured to

comply with this regulation:

7 Delete orders and patients after

the retention period (h) has

passed.

When deleting orders and patients, the application

sends them to the recycle bin. These orders /

patients remain in the recycle bin until they exceed

the number of hours set in this parameter. The

system then proceeds to permanently delete these

items from the database via the end-of-day

process.

24 (default value)

8 Number of logon attempts

before the user is blocked.

Indicates the amount of consecutive mistakes that

the user can do when logging in.

5

9 Password renewal period (d) Period of time when the system will request to

change the password for a user.

90 (default value)

10 Password expiry warning (d) Period of time when the system will start reminding

the user to change the password before the

password renewal period.

10

11 Minimum number of uppercase

letters in password.

Minimum number of uppercase letters that the

password must contain.

1 (default value)

12 Minimum number of digits or

symbols in password.

Minimum number of digits or symbols letters that

the password must contain.

1 (default value)

13 Minimum password length. Minimum length required for the password 6 (default value)

14 Request password when

accessing the Validation screen

(positive user identification) and

the Rule Engine Administration

screen.

Indicates if the password for the user will be

requested when entering into the validation screen

or Rule Engine validation screen.

Yes

15 Enable automatic data removal

in database.

Indicates if the system will remove order’s data

automatically on the database.

No (default value)

16 Enable administration trace. Indicates if configuration actions will be tracked or

not.

Yes (default value)

17 Add comment when editing

validated test (for all required

applications: General Lab,

Emergency Lab and

Microbiology)

When enabling this parameter, the application

forces the user who edits validated results and

wants to save them, to enter a comment. The call

out that appears for entering the comment cannot

be left empty. It is possible to enter a coded

comment.

These comments do not appear by default in the

report. If the user want to view them there, the

check box of the Imp./Host column on the

Comments screen should be selected.

Yes

18 Request confirmation when

changing results (for all

required applications: General

Lab and Emergency Lab)

If this parameter is enabled, the system requests

the user to confirm whether the test result change

should actually be saved in the database. This

option helps the user to avoid mistakes.

Yes

ID Parameter Description Recommended value

y Parameter configuration for 21 CFR Part 11 compliance

ID Configuration Procedure

19 Report configuration includes the user that validates the

result.

1. Choose the corresponding report.

2. Choose the Design button.

3. Include the Validation user name list field in the

report.

y Report configuration for 21 CFR Part 11 compliance

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

18

To ensure that these settings are properly configured,

contact your Roche Service Representative.

It is recommended that customers keep evidences of this

configuration according the required regulations.

ID Configuration

20 Check Backup List (Database configuration)

21 Check Backup task (Database configuration)

22 The communication channel uses SSL or HTTPS

between client and server

y Backup and communication configuration for 21 CFR Part

11 compliance

Roche Diagnostics

cobas infinity central lab · Software version 2.0 · User Guide - Microbiology module · Version 1.3

Interface overview

1 Interface overview .................................................................................................. 21

Page is loading ...

Roche cobas infinity central lab User manual

Roche cobas infinity central lab User manual

Related papers

Other documents