Aaeon GENE-APL5 User manual

Last Updated: June 13, 2019

GENE-APL5

3.5” Subcompact Board

User’s Manual 4

th

Ed

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Copyright Notice

This document is copyrighted, 2018. All rights are reserved. The original manufacturer

reserves the right to make improvements to the products described in this manual at

any time without notice.

No part of this manual may be reproduced, copied, translated, or transmitted in any

form or by any means without the prior written permission of the original

manufacturer. Information provided in this manual is intended to be accurate and

reliable. However, the original manufacturer assumes no responsibility for its use, or for

any infringements upon the rights of third parties that may result from its use.

The material in this document is for product information only and is subject to change

without notice. While reasonable efforts have been made in the preparation of this

document to assure its accuracy, AAEON assumes no liabilities resulting from errors or

omissions in this document, or from the use of the information contained herein.

AAEON reserves the right to make changes in the product design without notice to its

users.

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Acknowledgement

All other products’ name or trademarks are properties of their respective owners.

 Microsoft Windows is a registered trademark of Microsoft Corp.

 Intel, Pentium, Celeron, and Xeon

are registered trademarks of Intel Corporation

 Core, Atom are trademarks of Intel Corporation

 ITE is a trademark of Integrated Technology Express, Inc.

 IBM, PC/AT, PS/2, and VGA are trademarks of International Business Machines

Corporation.

All other product names or trademarks are properties of their respective owners.

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Packing List

Before setting up your product, please make sure the following items have been

shipped:

Item

Quantity

 GENE-APL5

1

If any of these items are missing or damaged, please contact your distributor or sales

representative immediately.

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About this Document

This User’s Manual contains all the essential information, such as detailed descriptions

and explanations on the product’s hardware and software features (if any), its

specifications, dimensions, jumper/connector settings/definitions, and driver installation

instructions (if any), to facilitate users in setting up their product.

Users may refer to the AAEON.com for the latest version of this document.

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Safety Precautions

Please read the following safety instructions carefully. It is advised that you keep this

manual for future references

1. All cautions and warnings on the device should be noted.

2. Make sure the power source matches the power rating of the device.

3. Position the power cord so that people cannot step on it. Do not place anything

over the power cord.

4. Always completely disconnect the power before working on the system’s

hardware.

5. No connections should be made when the system is powered as a sudden rush

of power may damage sensitive electronic components.

6. If the device is not to be used for a long time, disconnect it from the power

supply to avoid damage by transient over-voltage.

7. Always disconnect this device from any AC supply before cleaning.

8. While cleaning, use a damp cloth instead of liquid or spray detergents.

9. Make sure the device is installed near a power outlet and is easily accessible.

10. Keep this device away from humidity.

11. Place the device on a solid surface during installation to prevent falls

12. Do not cover the openings on the device to ensure optimal heat dissipation.

13. Watch out for high temperatures when the system is running.

14. Do not touch the heat sink or heat spreader when the system is running

15. Never pour any liquid into the openings. This could cause fire or electric shock.

16. As most electronic components are sensitive to static electrical charge, be sure to

ground yourself to prevent static charge when installing the internal components.

Use a grounding wrist strap and contain all electronic components in any

static-shielded containers.

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17. If any of the following situations arises, please the contact our service personnel:

i. Damaged power cord or plug

ii. Liquid intrusion to the device

iii. Exposure to moisture

iv. Device is not working as expected or in a manner as described in

this manual

v. The device is dropped or damaged

vi. Any obvious signs of damage displayed on the device

18. DO NOT LEAVE THIS DEVICE IN AN UNCONTROLLED ENVIRONMENT WITH

TEMPERATURES BEYOND THE DEVICE’S PERMITTED STORAGE TEMPERATURES

(SEE CHAPTER 1) TO PREVENT DAMAGE.

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FCC Statement

This device complies with Part 15 FCC Rules. Operation is

subject to the following two conditions: (1) this device may not

cause harmful interference, and (2) this device must accept any

interference received including interference that may cause

undesired operation.

Caution:

There is a danger of explosion if the battery is incorrectly replaced. Replace only with the

same or equivalent type recommended by the manufacturer. Dispose of used batteries

according to the manufacturer’s instructions and your local government’s recycling or

disposal directives.

Attention:

Il y a un risque d’explosion si la batterie est remplacée de façon incorrecte.

Ne la remplacer qu’avec le même modèle ou équivalent recommandé par le constructeur.

Recycler les batteries usées en accord avec les instructions du fabricant et les directives

gouvernementales de recyclage.

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China RoHS Requirements (CN)

产品中有毒有害物质或元素名称及含量

AAEON Main Board/ Daughter Board/ Backplane

部件名称

有毒有害物质或元素

铅

(Pb)

汞

(Hg)

镉

(Cd)

六价铬

(Cr(VI))

多溴联苯

(PBB)

多溴二苯醚

(PBDE)

印刷电路板

及其电子组件

○

外部信号

连接器及线材

○

O：表示该有毒有害物质在该部件所有均质材料中的含量均在

SJ/T 11363-2006 标准规定的限量要求以下。

X：表示该有毒有害物质至少在该部件的某一均质材料中的含量超出

SJ/T 11363-2006 标准规定的限量要求。

备注：此产品所标示之环保使用期限，系指在一般正常使用状况下。

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China RoHS Requirement (EN)

Poisonous or Hazardous Substances or Elements in Products

AAEON Main Board/ Daughter Board/ Backplane

Component

Poisonous or Hazardous Substances or Elements

Lead

(Pb)

Mercury

(Hg)

Cadmium

(Cd)

Hexavalent

Chromium

(Cr(VI))

Polybrominated

Biphenyls

(PBB)

Polybrominated

Diphenyl Ethers

(PBDE)

PCB & Other

Components

O

○

Wires &

Connectors

for External

Connections

O

O：The quantity of poisonous or hazardous substances or elements found in each of the

component's parts is below the SJ/T 11363-2006-stipulated requirement.

X: The quantity of poisonous or hazardous substances or elements found in at least one of the

component's parts is beyond the SJ/T 11363-2006-stipulated requirement.

Note: The Environment Friendly Use Period as labeled on this product is applicable under normal

usage only

 
 
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Table of Contents 
 
Chapter 1 - Product Specifications.......................................................................................... 1 
1  Specifications ............................................................................................................ 2 
Chapter 2 – Hardware Information ....................................................................................... 5 
1  Dimensions ............................................................................................................... 6 
1.1  Dimensions (Optional HDMI SKU) ..................................................... 8 
2  Jumpers and Connectors ...................................................................................... 10 
2.1  Jumpers and Connectors (Optional HDMI SKU)............................ 12 
3  Block Diagram .........................................................................................................14 
4  List of Jumpers ........................................................................................................ 15 
4.1  LVDS Port 1 Backlight Inverter VCC Selection (JP1) ....................... 16 
4.2  LVDS Port 1 Operating VDD Selection (JP1) .................................... 16 
4.3  LVDS Port 1 Backlight Lightness Control Mode Selection (JP2) .. 16 
4.4  COM2 Pin8 Function Selection (JP3) ................................................ 16 
4.5  COM3 Pin8 Function Selection (JP4) ................................................ 17 
4.6  Auto Power Button Enable/Disable Selection (JP5) ...................... 17 
4.7  Front Panel Connector (JP6) .............................................................. 17 
4.8  LVDS Port 2 Backlight Inverter VCC Selection (JP7) ...................... 18 
4.9  LVDS Port 2 Operating VDD Selection (JP7) .................................. 18 
4.10  LVDS Port 2 Backlight Lightness Control Mode Selection (JP8) . 18 
4.11  Touch Screen 4, 5, 8 Wire Selection (JP9) ....................................... 18 
4.12  Clear CMOS Jumper (JP10) ................................................................. 19 
5  List of Connectors .................................................................................................. 20 
5.1  +5VSB Output w/SMBus (CN1) ........................................................ 22 
5.2  LVDS Port 1 Inverter / Backlight Connector (CN2) ....................... 22 
5.3  +5V Output for SATA HDD (CN3) .................................................... 23 
5.4  SATA Port (CN4) ................................................................................... 23 

 
 
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5.5  External Power Input (CN5) ............................................................... 24 
5.6  External +5VSB Input (CN6) (Optional) .......................................... 24 
5.7  Audio I/O Port (CN7) .......................................................................... 25 
5.8  LVDS Port 1 (CN8) ................................................................................ 26 
5.9  COM Port 2 (CN9) ............................................................................... 28 
5.10  LPT Port or Digital I/O Port (CN10) .................................................. 30 
5.11  LPC Port (CN11) .................................................................................... 33 
5.12  COM Port 3 (CN12) ............................................................................. 34 
5.13  BIOS Debug Port (CN13) .................................................................... 36 
5.14  COM Port 4 (CN14) ............................................................................. 36 
5.15  PS/2 Keyboard/Mouse Combo Port (CN15) .................................. 37 
5.16  USB 2.0 Port 2 (CN16) ......................................................................... 38 
5.17  USB 2.0 Port 3 (CN17) ......................................................................... 38 
5.18  COM Port 1 (CN18) (Wafer, Optional) .............................................. 39 
5.19  USB 2.0 Port 4 (CN19)......................................................................... 40 
5.20  USB 2.0 Port 5 (CN20) ........................................................................ 40 
5.21  LVDS Port 2 (CN21) ..............................................................................41 
5.22  Touchscreen Connector (CN22) ....................................................... 43 
5.23  CPU Fan (CN23, Optional) ................................................................. 46 
5.24  LVDS Port 2 Inverter / Backlight Connector (CN24) .................... 46 
5.25  USB 3.0 Ports 0 and 1 (CN25) ........................................................... 47 
5.26  LAN (RJ-45) Port 2 (CN26) ................................................................ 48 
5.27  LAN (RJ-45) Port 1 (CN27) ................................................................. 48 
5.28  COM Port 1 (CN28, D-SUB 9) ........................................................... 49 
5.29  HDMI Port (CN29, Optional) ............................................................. 50 
5.30  Battery (CN30) ...................................................................................... 51 
5.31  VGA Port (CN31) ................................................................................... 51 
5.32  Micro SIM Card Socket (CN32) ......................................................... 52 

 
 
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5.33  Mini-Card Slot (Half-Mini) (CN33) ................................................... 52 
5.34  mSATA (Full-Size) (CN34) ................................................................... 55 
Chapter 3 - AMI BIOS Setup ................................................................................................ 58 
1  System Test and Initialization .............................................................................. 59 
2  AMI BIOS Setup ..................................................................................................... 60 
3  Setup submenu: Main ........................................................................................... 61 
4  Setup submenu: Advanced ................................................................................. 62 
4.1  Advanced: Trusted Computing ......................................................... 63 
4.2  Advanced: CPU Configuration ......................................................... 65 
4.3  Advanced: SATA Configuration ........................................................ 67 
4.3.1  PCI Express Configuration ................................................ 69 
4.4  Advanced: Hardware Monitor .......................................................... 70 
4.4.1  CPU Smart Fan Configuration .......................................... 71 
4.5  Advanced: SIO Configuration ........................................................... 72 
4.5.1  SIO Configuration: Serial Port 1 Configuration ............ 73 
4.5.2  SIO Configuration: Serial Port 2 Configuration ............ 74 
4.5.3  SIO Configuration: Serial Port 3 Configuration ............ 75 
4.5.4  SIO Configuration: Serial Port 4 Configuration............ 76 
4.5.5  SIO Configuration: Parallel Port Configuration ............ 77 
4.6  Advanced: Power Management ....................................................... 78 
4.7  Advanced: Digital IO Port Configuration ....................................... 79 
5  Setup submenu: Chipset ...................................................................................... 80 
5.1  Chipset: North Bridge ......................................................................... 81 
5.1.1  North Bridge: LVDS Panel Configuration ...................... 82 
6  Setup submenu: Security ..................................................................................... 84 
7  Setup submenu: Boot ........................................................................................... 85 
8  Setup submenu: Save & Exit ............................................................................... 86 
9  Note for Users ........................................................................................................ 87 

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Chapter 4 – Drivers Installation ............................................................................................ 88

4.1 Driver Download/Installation .............................................................................. 89

Appendix A - Watchdog Timer Programming .................................................................... 91

A.1 Watchdog Timer Registers .................................................................................. 92

A.2 Watchdog Sample Program ................................................................................ 93

Appendix B - I/O Information .............................................................................................. 96

B.1 I/O Address Map ................................................................................................... 97

B.2 Memory Address Map ......................................................................................... 99

B.3 IRQ Mapping Chart ............................................................................................. 100

Appendix C – Mating Connectors ...................................................................................... 105

C.1 List of Mating Connectors and Cables ............................................................ 106

Appendix D – Electrical Specifications for I/O Ports ......................................................... 109

D.1 Electrical Specifications for I/O Ports ................................................................ 110

Appendix E – Digital I/O Ports ............................................................................................. 111

E.1 Digital I/O Register ............................................................................................... 112

E.2 Digital I/O Sample Code (4 in 4 out, 2 low 2 high) ....................................... 114

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Chapter 1

Chapter 1 - Product Specifications

Chapter 1 – Product Specifications 2

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1.1 Specifications

System

Form Factor

3.5'' SubCompact Board

CPU

Intel® Pentium® N4200/ Celeorn® N3350

Processor SoC

CPU Frequency

Up to 2.5 GHz

Chipset

Intel® Pentium® N4200/ Celeron® N3350

Processor SoC

Memory Type

DDR3L 1866MHz, SODIMM x 1

Max. Memory Capacity

Up to 8GB

BIOS

UEFI

Wake on LAN

Yes

Watchdog Timer

255 Levels

Power Requirement

+12V OR +9~19V (optional)

Power Supply Type

AT/ ATX

Power Consumption (Typical)

Intel® N4200, DDR3L 1600MHz 8GB, 1.57A@

+12V

Dimension (L x W)

5.75" x 4" (146mm x 101.7mm)

Operating Temperature

32°F ~ 140°F (0°C ~ 60°C)

Storage Temperature

-40°F ~ 176°F (-40°C ~ 81°C)

Operating Humidity

0% ~ 90% relative humidity, non-condensing

MTBF (Hours)

128,000

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System

Certification

CE/FCC

I/O

Ethernet

Intel® i210/I211, 10/100/1000Base-TX, RJ-45 x 2

Audio

High Definition Audio Interface

USB Port

USB 3.0 x 2

USB 2.0 x 4

Serial Port

RS-232 x 2 , RS-232/422/485 x 2

Parallel Port

SPP/EPP/ECP x 1 (Option, Shared with DIO)

HDD Interface

SATA 3.0 x 1

+5V SATA power connector x 1

FDD Interface

—

SSD

mSATA

Expansion Slot

mSATA x 1 (Full-size) MiniCard x 1 (Half-size)

DIO

8-bit

SIM

x 1 (uSIM) (Optional)

TPM

TPM2.0 x 1 (Optional)

Touch

x 1 (Optional)

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Display

VGA/LCD Controller

Intel® Atom™ N4200/ N3350 Processor SoC

integrate

Video Output

VGA/LVDS/ LVDS2 (co-layout with HDMI,

optional)

Backlight inverter supply

Yes

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Chapter 2

Chapter 2 – Hardware Information

Chapter 2 – Hardware Information 6

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2.1 Dimensions

Component Side

A

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